Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SSUD9_RS00405 Genome accession   NC_017620
Coordinates   70362..71543 (+) Length   393 a.a.
NCBI ID   WP_004194467.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65362..76543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS00380 (SSUD9_0063) hexB 65422..67359 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  SSUD9_RS00385 (SSUD9_0064) ruvA 67398..67988 (+) 591 WP_014636743.1 Holliday junction branch migration protein RuvA Machinery gene
  SSUD9_RS00390 (SSUD9_0065) - 68242..68418 (+) 177 Protein_57 DNA-3-methyladenine glycosylase I -
  SSUD9_RS00395 (SSUD9_0066) - 68548..69837 (-) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSUD9_RS00400 (SSUD9_0067) - 69921..70325 (+) 405 Protein_59 DNA-3-methyladenine glycosylase I -
  SSUD9_RS00405 (SSUD9_0068) cinA 70362..71543 (+) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  SSUD9_RS00410 (SSUD9_0069) recA 71595..72746 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  SSUD9_RS00415 (SSUD9_0070) spx 72982..73380 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  SSUD9_RS00420 (SSUD9_0071) - 73480..73746 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SSUD9_RS00425 (SSUD9_0072) ruvX 73746..74165 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  SSUD9_RS00430 (SSUD9_0073) - 74177..74497 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  SSUD9_RS00435 (SSUD9_0074) - 75055..75633 (+) 579 WP_044675891.1 nucleotidyltransferase family protein -
  SSUD9_RS00440 (SSUD9_0075) comX/sigX 75706..75972 (+) 267 WP_002939335.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43013.95 Da        Isoelectric Point: 4.4112

>NTDB_id=40736 SSUD9_RS00405 WP_004194467.1 70362..71543(+) (cinA) [Streptococcus suis D9]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQI
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRILRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=40736 SSUD9_RS00405 WP_004194467.1 70362..71543(+) (cinA) [Streptococcus suis D9]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTCTATTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTCTGTCTGTACTGG
AAGTAGCCCGTCAGCGGAGCGACCTGGTCATTCTCTGTGGAGGATTGGGTCCAACTGAGGATGACTTGACCAAGCAGATC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTATCCTACGTTTTTTTGGCATTGG
TGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATCGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTAAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

95.929

100

0.959
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus pneumoniae TIGR4

55.769

100

0.59
  cinA Streptococcus pneumoniae R36A

55.769

100

0.59
  cinA Streptococcus mitis SK321

55.769

100

0.59
  cinA Streptococcus pneumoniae Rx1

55.769

100

0.59
  cinA Streptococcus pneumoniae R6

55.769

100

0.59
  cinA Streptococcus mitis NCTC 12261

55.529

100

0.588
  cinA Streptococcus pneumoniae D39

55.529

100

0.588
  cinA Bacillus subtilis subsp. subtilis str. 168

40.665

99.491

0.405

Multiple sequence alignment