Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | SSUD9_RS00385 | Genome accession | NC_017620 |
| Coordinates | 67398..67988 (+) | Length | 196 a.a. |
| NCBI ID | WP_014636743.1 | Uniprot ID | - |
| Organism | Streptococcus suis D9 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 62398..72988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUD9_RS00375 (SSUD9_0061) | - | 63781..65304 (+) | 1524 | WP_004194221.1 | Heme/copper-type cytochrome/quinol oxidase subunit 1 | - |
| SSUD9_RS00380 (SSUD9_0063) | hexB | 65422..67359 (+) | 1938 | WP_004194473.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| SSUD9_RS00385 (SSUD9_0064) | ruvA | 67398..67988 (+) | 591 | WP_014636743.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| SSUD9_RS00390 (SSUD9_0065) | - | 68242..68418 (+) | 177 | Protein_57 | DNA-3-methyladenine glycosylase I | - |
| SSUD9_RS00395 (SSUD9_0066) | - | 68548..69837 (-) | 1290 | WP_014636745.1 | IS4-like element ISSsu2 family transposase | - |
| SSUD9_RS00400 (SSUD9_0067) | - | 69921..70325 (+) | 405 | Protein_59 | DNA-3-methyladenine glycosylase I | - |
| SSUD9_RS00405 (SSUD9_0068) | cinA | 70362..71543 (+) | 1182 | WP_004194467.1 | competence/damage-inducible protein A | Machinery gene |
| SSUD9_RS00410 (SSUD9_0069) | recA | 71595..72746 (+) | 1152 | WP_011922545.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21725.12 Da Isoelectric Point: 5.3513
>NTDB_id=40735 SSUD9_RS00385 WP_014636743.1 67398..67988(+) (ruvA) [Streptococcus suis D9]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGKVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGKVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK
Nucleotide
Download Length: 591 bp
>NTDB_id=40735 SSUD9_RS00385 WP_014636743.1 67398..67988(+) (ruvA) [Streptococcus suis D9]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGAAAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGAAAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae R6 |
75.127 |
100 |
0.755 |
| ruvA | Streptococcus pneumoniae D39 |
75.127 |
100 |
0.755 |
| ruvA | Streptococcus pneumoniae TIGR4 |
75.127 |
100 |
0.755 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
38.916 |
100 |
0.403 |