Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY27_RS02145 | Genome accession | NZ_CP046761 |
| Coordinates | 409242..409637 (-) | Length | 131 a.a. |
| NCBI ID | WP_069485415.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AM46865 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 404242..414637
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY27_RS02125 | coaE | 404754..405368 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| GPY27_RS02130 | pilD | 405369..406238 (-) | 870 | WP_031830116.1 | A24 family peptidase | Machinery gene |
| GPY27_RS02135 | pilC | 406303..407526 (-) | 1224 | WP_031830115.1 | type II secretion system F family protein | Machinery gene |
| GPY27_RS02140 | pilB | 407550..409235 (-) | 1686 | WP_140094612.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY27_RS02145 | pilA | 409242..409637 (-) | 396 | WP_069485415.1 | pilin | Machinery gene |
| GPY27_RS02150 | nadC | 409900..410787 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY27_RS02155 | ampD | 410880..411431 (+) | 552 | WP_025525953.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY27_RS02160 | pdhR | 411837..412604 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13597.69 Da Isoelectric Point: 9.5423
>NTDB_id=407321 GPY27_RS02145 WP_069485415.1 409242..409637(-) (pilA) [Vibrio parahaemolyticus strain AM46865]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVAKSEAATALGSIRALVTPAEMMIQSEGTISGGVSALGGSAS
HALGTISASGSEIKFTFNTGSLNNKKITLTKNPSTGWACTYDTGVPLDRCN
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVAKSEAATALGSIRALVTPAEMMIQSEGTISGGVSALGGSAS
HALGTISASGSEIKFTFNTGSLNNKKITLTKNPSTGWACTYDTGVPLDRCN
Nucleotide
Download Length: 396 bp
>NTDB_id=407321 GPY27_RS02145 WP_069485415.1 409242..409637(-) (pilA) [Vibrio parahaemolyticus strain AM46865]
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTAGTGGCTATTATTGGTGTTTT
GTCAGCAATTGCCGTTCCAGCTTATAAAGATTATGTTGCGAAAAGTGAAGCTGCAACAGCTCTCGGAAGTATAAGGGCAC
TAGTAACTCCTGCCGAGATGATGATTCAATCTGAAGGAACAATTAGTGGTGGTGTTAGTGCTTTGGGAGGCTCTGCTTCA
CATGCTTTAGGAACTATCTCAGCTTCTGGATCAGAAATTAAATTCACATTTAATACTGGCTCTTTAAATAACAAGAAAAT
AACTTTAACAAAAAACCCTTCTACTGGTTGGGCATGTACTTATGACACAGGTGTTCCACTAGATAGATGTAACTAA
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTAGTGGCTATTATTGGTGTTTT
GTCAGCAATTGCCGTTCCAGCTTATAAAGATTATGTTGCGAAAAGTGAAGCTGCAACAGCTCTCGGAAGTATAAGGGCAC
TAGTAACTCCTGCCGAGATGATGATTCAATCTGAAGGAACAATTAGTGGTGGTGTTAGTGCTTTGGGAGGCTCTGCTTCA
CATGCTTTAGGAACTATCTCAGCTTCTGGATCAGAAATTAAATTCACATTTAATACTGGCTCTTTAAATAACAAGAAAAT
AACTTTAACAAAAAACCCTTCTACTGGTTGGGCATGTACTTATGACACAGGTGTTCCACTAGATAGATGTAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
50 |
96.183 |
0.481 |
| pilA | Pseudomonas aeruginosa PAK |
43.066 |
100 |
0.45 |
| pilA | Vibrio cholerae strain A1552 |
41.791 |
100 |
0.427 |
| pilA | Vibrio cholerae C6706 |
41.791 |
100 |
0.427 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.791 |
100 |
0.427 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.27 |
96.183 |
0.397 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.281 |
97.71 |
0.374 |
| pilA | Acinetobacter baumannii strain A118 |
36.364 |
100 |
0.366 |