Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY27_RS02135 Genome accession   NZ_CP046761
Coordinates   406303..407526 (-) Length   407 a.a.
NCBI ID   WP_031830115.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401303..412526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS02100 rimM 401538..402086 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  GPY27_RS02105 trmD 402114..402857 (+) 744 WP_031830117.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GPY27_RS02110 rplS 402899..403252 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  GPY27_RS02115 yacG 403723..403917 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  GPY27_RS02120 zapD 403986..404726 (-) 741 WP_023624252.1 cell division protein ZapD -
  GPY27_RS02125 coaE 404754..405368 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  GPY27_RS02130 pilD 405369..406238 (-) 870 WP_031830116.1 A24 family peptidase Machinery gene
  GPY27_RS02135 pilC 406303..407526 (-) 1224 WP_031830115.1 type II secretion system F family protein Machinery gene
  GPY27_RS02140 pilB 407550..409235 (-) 1686 WP_140094612.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY27_RS02145 pilA 409242..409637 (-) 396 WP_069485415.1 pilin Machinery gene
  GPY27_RS02150 nadC 409900..410787 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY27_RS02155 ampD 410880..411431 (+) 552 WP_025525953.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45162.32 Da        Isoelectric Point: 10.3852

>NTDB_id=407319 GPY27_RS02135 WP_031830115.1 406303..407526(-) (pilC) [Vibrio parahaemolyticus strain AM46865]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEVEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVCISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=407319 GPY27_RS02135 WP_031830115.1 406303..407526(-) (pilC) [Vibrio parahaemolyticus strain AM46865]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGAAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAGTCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATGTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Acinetobacter baumannii D1279779

41.25

98.28

0.405
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment