Detailed information NTG0407318

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY27_RS02130
• Genome accession: NZ_CP046761
• Coordinates: 405369..406238 (-)
• Length: 289 a.a.
• NCBI ID: WP_031830116.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM46865
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 400369..411238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY27_RS02095	rpsP	401261..401509 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
GPY27_RS02100	rimM	401538..402086 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY27_RS02105	trmD	402114..402857 (+)	744	WP_031830117.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY27_RS02110	rplS	402899..403252 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY27_RS02115	yacG	403723..403917 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY27_RS02120	zapD	403986..404726 (-)	741	WP_023624252.1	cell division protein ZapD	-
GPY27_RS02125	coaE	404754..405368 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
GPY27_RS02130	pilD	405369..406238 (-)	870	WP_031830116.1	A24 family peptidase	Machinery gene
GPY27_RS02135	pilC	406303..407526 (-)	1224	WP_031830115.1	type II secretion system F family protein	Machinery gene
GPY27_RS02140	pilB	407550..409235 (-)	1686	WP_140094612.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY27_RS02145	pilA	409242..409637 (-)	396	WP_069485415.1	pilin	Machinery gene
GPY27_RS02150	nadC	409900..410787 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32403.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=407318 GPY27_RS02130 WP_031830116.1 405369..406238(-) (pilD) [Vibrio parahaemolyticus strain AM46865]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWSGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLSALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407318 GPY27_RS02130 WP_031830116.1 405369..406238(-) (pilD) [Vibrio parahaemolyticus strain AM46865]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCTGACCAATTAACATTACCA
TTAACTTGGTCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGGATGGGTTACGGTGATTTTA
AATTGCTGTCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446