Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GO596_RS02260 Genome accession   NZ_CP046628
Coordinates   469780..470175 (-) Length   131 a.a.
NCBI ID   WP_021141449.1    Uniprot ID   A0A1G9M4F1
Organism   Streptococcus equinus strain CNU 77-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 464780..475175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS02255 (GO596_02255) - 468799..469599 (-) 801 WP_039697668.1 Cof-type HAD-IIB family hydrolase -
  GO596_RS02260 (GO596_02260) ssbA 469780..470175 (-) 396 WP_021141449.1 single-stranded DNA-binding protein Machinery gene
  GO596_RS02265 (GO596_02265) ytpR 470278..470904 (-) 627 WP_027968031.1 YtpR family tRNA-binding protein -
  GO596_RS02270 (GO596_02270) - 470913..471230 (-) 318 WP_021141448.1 thioredoxin family protein -
  GO596_RS02275 (GO596_02275) - 471223..471516 (-) 294 WP_232516869.1 DUF4651 domain-containing protein -
  GO596_RS02280 (GO596_02280) pepA 471633..472700 (+) 1068 WP_024344502.1 glutamyl aminopeptidase -
  GO596_RS02285 (GO596_02285) proC 472762..473532 (+) 771 WP_024344501.1 pyrroline-5-carboxylate reductase -
  GO596_RS02290 (GO596_02290) - 473584..474219 (-) 636 WP_027968028.1 CPBP family intramembrane glutamic endopeptidase -
  GO596_RS02295 (GO596_02295) - 474231..474683 (-) 453 WP_157339146.1 ABC transporter permease -
  GO596_RS02300 (GO596_02300) - 474739..474936 (-) 198 WP_027968026.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14847.84 Da        Isoelectric Point: 5.7866

>NTDB_id=406220 GO596_RS02260 WP_021141449.1 469780..470175(-) (ssbA) [Streptococcus equinus strain CNU 77-23]
MYNKVIMIGRLTAQPELVTTANDKSVTRVTLAVNRRFKSQNGEREADFISLVVWGRLAETLVSYAGKGSLLSVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=406220 GO596_RS02260 WP_021141449.1 469780..470175(-) (ssbA) [Streptococcus equinus strain CNU 77-23]
ATGTACAATAAAGTAATTATGATTGGGCGCTTGACGGCGCAACCTGAACTTGTGACGACAGCTAATGATAAAAGTGTTAC
ACGTGTAACACTTGCGGTCAATCGACGTTTTAAATCGCAAAATGGTGAGCGTGAGGCTGATTTCATTTCGCTGGTGGTAT
GGGGACGTTTGGCAGAAACACTTGTGTCTTATGCAGGCAAAGGCAGCTTACTTTCTGTTGATGGCGAACTTCGCACACGC
AAGTACGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGTTATGCCATTCTTTCCAACTCTTAGAAAGTCGCGCACA
GCGTGCTATGCGAGAAAATAATGTGGCAAATGATTTGGCAGATTTAGTTCTGGAAGAGGAGGAATTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9M4F1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB/cilA Streptococcus pneumoniae R6

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae D39

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405

Multiple sequence alignment