Detailed information NTG0406142

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: GO995_RS01035
• Genome accession: NZ_CP046624
• Coordinates: 166361..166792 (+)
• Length: 143 a.a.
• NCBI ID: WP_157628644.1
• Uniprot ID: A0A6G8I015
• Organism: Streptococcus ruminicola strain CNU_G3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 161361..171792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO995_RS01015 (GO995_01015)	-	163735..164103 (+)	369	WP_157628640.1	DUF1033 family protein	-
GO995_RS01020 (GO995_01020)	comYA	164176..165117 (+)	942	WP_157628641.1	competence type IV pilus ATPase ComGA	Machinery gene
GO995_RS01025 (GO995_01025)	comYB	165041..166084 (+)	1044	WP_202913541.1	competence type IV pilus assembly protein ComGB	Machinery gene
GO995_RS01030 (GO995_01030)	comYC	166084..166386 (+)	303	WP_157628643.1	competence type IV pilus major pilin ComGC	Machinery gene
GO995_RS01035 (GO995_01035)	comYD	166361..166792 (+)	432	WP_157628644.1	competence type IV pilus minor pilin ComGD	Machinery gene
GO995_RS01040 (GO995_01040)	comYE	166746..167039 (+)	294	WP_157628645.1	competence type IV pilus minor pilin ComGE	Machinery gene
GO995_RS01045 (GO995_01045)	comYF	167023..167460 (+)	438	WP_157628646.1	competence type IV pilus minor pilin ComGF	Machinery gene
GO995_RS01050 (GO995_01050)	comGG	167432..167782 (+)	351	WP_133018088.1	competence type IV pilus minor pilin ComGG	-
GO995_RS01055 (GO995_01055)	comYH	167836..168792 (+)	957	WP_006531743.1	class I SAM-dependent methyltransferase	Machinery gene
GO995_RS01060 (GO995_01060)	-	168846..170045 (+)	1200	WP_039697418.1	acetate kinase	-
GO995_RS01065 (GO995_01065)	-	170204..170401 (+)	198	WP_074561137.1	helix-turn-helix transcriptional regulator	-
GO995_RS01070 (GO995_01070)	-	170417..170617 (+)	201	WP_157628647.1	hypothetical protein	-
GO995_RS01075 (GO995_01075)	-	170618..171073 (+)	456	WP_238385877.1	ABC transporter permease	-
GO995_RS01080 (GO995_01080)	-	171089..171724 (+)	636	WP_157628648.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 16045.40 Da
• Isoelectric Point: 9.6586

>NTDB_id=406142 GO995_RS01035 WP_157628644.1 166361..166792(+) (comYD) [Streptococcus ruminicola strain CNU_G3]
MKLKNKTLRAFTLIESLLTLAISCFMVIMLSGSVNHIFQSVDETLFFLSFENLYRDTQKLASVKQESQTLQISQDAISNG
VTSVRIPKTVSVAQNYQLVFDKAGGNSSLTKIQFHTENQAINYQLYIGSGNYKKTETKSLHTP

Nucleotide

• Length: 432 bp

>NTDB_id=406142 GO995_RS01035 WP_157628644.1 166361..166792(+) (comYD) [Streptococcus ruminicola strain CNU_G3]
ATGAAGCTAAAAAACAAAACCCTTAGAGCCTTTACCCTCATCGAAAGTTTGCTGACCTTAGCAATTTCTTGTTTCATGGT
CATCATGCTATCAGGTTCGGTCAATCATATTTTTCAATCGGTCGATGAAACTCTGTTCTTTCTTTCCTTTGAAAATCTTT
ATCGTGACACACAAAAATTAGCCAGTGTTAAGCAGGAAAGTCAAACTTTGCAGATATCGCAAGATGCTATCTCAAATGGG
GTCACTAGTGTTAGGATTCCTAAAACTGTATCGGTTGCTCAAAACTATCAACTTGTTTTTGATAAAGCTGGGGGAAATTC
GTCTCTTACTAAGATACAGTTTCATACAGAAAATCAAGCCATTAATTATCAATTGTACATAGGAAGTGGTAACTATAAAA
AAACAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

3D structure

• AlphaFold DB: A0A6G8I015

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	91.608	0.503
comYD	Streptococcus mutans UA159	54.962	91.608	0.503
comYD	Streptococcus gordonii str. Challis substr. CH1	45.926	94.406	0.434
comGD/cglD	Streptococcus mitis NCTC 12261	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae Rx1	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae D39	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae R6	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae TIGR4	43.182	92.308	0.399
comGD/cglD	Streptococcus mitis SK321	43.182	92.308	0.399