Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | GNH96_RS09165 | Genome accession | NZ_CP046565 |
| Coordinates | 1928008..1928421 (+) | Length | 137 a.a. |
| NCBI ID | WP_169603396.1 | Uniprot ID | A0A858Q8G3 |
| Organism | Methylococcus geothermalis strain IM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1923008..1933421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNH96_RS09155 (GNH96_09120) | - | 1923796..1924494 (+) | 699 | WP_169603394.1 | glycosyltransferase | - |
| GNH96_RS16345 | - | 1924671..1925234 (+) | 564 | Protein_1810 | tetratricopeptide repeat protein | - |
| GNH96_RS16060 | - | 1925724..1927898 (+) | 2175 | WP_228719787.1 | tetratricopeptide repeat protein | - |
| GNH96_RS09165 (GNH96_09130) | pilA2 | 1928008..1928421 (+) | 414 | WP_169603396.1 | pilin | Machinery gene |
| GNH96_RS09170 (GNH96_09135) | - | 1928472..1930508 (-) | 2037 | WP_228719788.1 | tetratricopeptide repeat protein | - |
| GNH96_RS09175 (GNH96_09140) | - | 1930732..1932426 (-) | 1695 | WP_169603397.1 | hypothetical protein | - |
| GNH96_RS09180 (GNH96_09145) | - | 1932446..1932982 (-) | 537 | WP_228719789.1 | c-type cytochrome | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14047.20 Da Isoelectric Point: 8.1053
>NTDB_id=405587 GNH96_RS09165 WP_169603396.1 1928008..1928421(+) (pilA2) [Methylococcus geothermalis strain IM1]
MKAVQRGFTLIELMIVVAIIGILAAVALPAYQDYSVRAKVSELILAASKYRTDITEKCQLATSCDAAGTSLTVTFGGKIT
GGSVADNGVVTIAGSTATDSVGANVTIVLTPSWNSTLGTAVWSCTGTPARYVPGSCR
MKAVQRGFTLIELMIVVAIIGILAAVALPAYQDYSVRAKVSELILAASKYRTDITEKCQLATSCDAAGTSLTVTFGGKIT
GGSVADNGVVTIAGSTATDSVGANVTIVLTPSWNSTLGTAVWSCTGTPARYVPGSCR
Nucleotide
Download Length: 414 bp
>NTDB_id=405587 GNH96_RS09165 WP_169603396.1 1928008..1928421(+) (pilA2) [Methylococcus geothermalis strain IM1]
ATGAAAGCGGTACAAAGAGGTTTCACACTGATCGAACTCATGATCGTGGTGGCGATCATCGGCATCCTCGCTGCGGTTGC
CTTGCCGGCTTACCAGGACTATTCGGTTCGGGCCAAGGTTTCCGAGCTAATCCTTGCGGCATCCAAATATCGAACGGATA
TCACTGAAAAATGCCAGCTTGCCACTAGTTGCGACGCCGCAGGCACAAGTTTGACGGTTACGTTCGGAGGAAAGATTACC
GGTGGCAGTGTGGCAGATAACGGTGTGGTGACGATCGCTGGGAGCACCGCAACGGACAGCGTAGGGGCTAATGTAACCAT
CGTGCTGACGCCGAGCTGGAATTCGACTCTCGGAACCGCCGTTTGGAGCTGCACGGGGACTCCTGCCAGATATGTTCCTG
GCTCTTGTCGCTAA
ATGAAAGCGGTACAAAGAGGTTTCACACTGATCGAACTCATGATCGTGGTGGCGATCATCGGCATCCTCGCTGCGGTTGC
CTTGCCGGCTTACCAGGACTATTCGGTTCGGGCCAAGGTTTCCGAGCTAATCCTTGCGGCATCCAAATATCGAACGGATA
TCACTGAAAAATGCCAGCTTGCCACTAGTTGCGACGCCGCAGGCACAAGTTTGACGGTTACGTTCGGAGGAAAGATTACC
GGTGGCAGTGTGGCAGATAACGGTGTGGTGACGATCGCTGGGAGCACCGCAACGGACAGCGTAGGGGCTAATGTAACCAT
CGTGCTGACGCCGAGCTGGAATTCGACTCTCGGAACCGCCGTTTGGAGCTGCACGGGGACTCCTGCCAGATATGTTCCTG
GCTCTTGTCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
47.143 |
100 |
0.482 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
46.429 |
100 |
0.474 |
| comP | Acinetobacter baylyi ADP1 |
42.667 |
100 |
0.467 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.379 |
100 |
0.438 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.42 |
100 |
0.431 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.333 |
100 |
0.409 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.526 |
100 |
0.394 |
| pilA | Haemophilus influenzae Rd KW20 |
37.063 |
100 |
0.387 |
| pilA | Pseudomonas aeruginosa PAK |
34 |
100 |
0.372 |
| pilA | Haemophilus influenzae 86-028NP |
35.664 |
100 |
0.372 |