Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   GOM46_RS01750 Genome accession   NZ_CP046525
Coordinates   339455..339850 (+) Length   131 a.a.
NCBI ID   WP_235083787.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 334455..344850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01710 (GOM46_01695) - 334548..335327 (+) 780 WP_006150117.1 hypothetical protein -
  GOM46_RS01715 (GOM46_01700) - 335429..335662 (+) 234 WP_000368732.1 DUF1858 domain-containing protein -
  GOM46_RS01720 (GOM46_01705) - 335662..336996 (+) 1335 WP_235083781.1 DUF438 domain-containing protein -
  GOM46_RS01725 (GOM46_01710) - 337006..337260 (+) 255 WP_235083782.1 DUF1912 family protein -
  GOM46_RS01730 (GOM46_01715) - 337336..337626 (+) 291 WP_024053819.1 DUF4651 domain-containing protein -
  GOM46_RS01735 (GOM46_01720) - 337623..337940 (+) 318 WP_235083783.1 thioredoxin family protein -
  GOM46_RS01740 (GOM46_01725) ytpR 337950..338576 (+) 627 WP_235083785.1 YtpR family tRNA-binding protein -
  GOM46_RS01745 (GOM46_01730) - 338618..339379 (+) 762 WP_235083786.1 SDR family NAD(P)-dependent oxidoreductase -
  GOM46_RS01750 (GOM46_01735) ssbB/cilA 339455..339850 (+) 396 WP_235083787.1 single-stranded DNA-binding protein Machinery gene
  GOM46_RS01755 (GOM46_01740) - 340038..341021 (+) 984 WP_235083788.1 substrate-binding domain-containing protein -
  GOM46_RS01760 (GOM46_01745) - 341021..342322 (+) 1302 WP_235083789.1 sensor histidine kinase -
  GOM46_RS01765 (GOM46_01750) - 342344..343027 (+) 684 WP_025173290.1 response regulator transcription factor -
  GOM46_RS01770 (GOM46_01755) - 343024..344322 (+) 1299 WP_235083791.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14767.76 Da        Isoelectric Point: 5.9409

>NTDB_id=405052 GOM46_RS01750 WP_235083787.1 339455..339850(+) (ssbB/cilA) [Streptococcus infantis strain SO]
MYNKVILIGRIVATPELHKTNNDKSVARATIAINRRFKDQNGEREADFINIVVWGKLAETLASYATKGSLISVDGELRTR
KFEKNGQINYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=405052 GOM46_RS01750 WP_235083787.1 339455..339850(+) (ssbB/cilA) [Streptococcus infantis strain SO]
ATGTATAATAAAGTTATTCTTATTGGAAGAATTGTGGCAACGCCAGAATTGCACAAAACCAACAATGACAAGTCTGTAGC
TCGTGCGACCATTGCCATTAACCGTCGTTTTAAGGATCAAAACGGGGAACGTGAAGCGGACTTCATCAATATTGTGGTCT
GGGGCAAGCTTGCTGAAACCTTAGCTAGCTACGCGACTAAAGGCAGTCTCATTTCTGTAGATGGGGAGCTCCGTACCCGT
AAGTTTGAGAAGAATGGTCAGATCAACTATGTGACCGAAGTTCTCGCTACAGGATTTCAACTTTTGGAAAGTCGCGCCCA
ACGTGCTATGCGTGAAAATAATGCTGGTCAAGACTTGGCAGATTTAGTTTTGGAAGAGGAGGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

90.84

100

0.908
  ssbB/cilA Streptococcus pneumoniae Rx1

90.076

100

0.901
  ssbB/cilA Streptococcus pneumoniae D39

90.076

100

0.901
  ssbB/cilA Streptococcus pneumoniae R6

90.076

100

0.901
  ssbB/cilA Streptococcus mitis NCTC 12261

90.076

100

0.901
  ssbB/cilA Streptococcus mitis SK321

90.076

100

0.901
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment