Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   GOM46_RS01130 Genome accession   NZ_CP046525
Coordinates   224481..224915 (+) Length   144 a.a.
NCBI ID   WP_029689590.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 219481..229915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01105 (GOM46_01090) nagA 220543..221694 (+) 1152 WP_006150219.1 N-acetylglucosamine-6-phosphate deacetylase -
  GOM46_RS01110 (GOM46_01095) - 221860..222237 (+) 378 WP_006150119.1 DUF1033 family protein -
  GOM46_RS01115 (GOM46_01100) comGA/cglA/cilD 222289..223227 (+) 939 WP_235083711.1 competence type IV pilus ATPase ComGA Machinery gene
  GOM46_RS01120 (GOM46_01105) comGB/cglB 223151..224194 (+) 1044 WP_235083712.1 competence type IV pilus assembly protein ComGB Machinery gene
  GOM46_RS01125 (GOM46_01110) comGC/cglC 224195..224518 (+) 324 WP_235083713.1 competence type IV pilus major pilin ComGC Machinery gene
  GOM46_RS01130 (GOM46_01115) comGD/cglD 224481..224915 (+) 435 WP_029689590.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOM46_RS01135 (GOM46_01120) comGE/cglE 224878..225180 (+) 303 WP_025169999.1 competence type IV pilus minor pilin ComGE Machinery gene
  GOM46_RS01140 (GOM46_01125) comGF/cglF 225143..225604 (+) 462 WP_235083714.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOM46_RS01145 (GOM46_01130) comGG 225582..226019 (+) 438 WP_235083715.1 competence type IV pilus minor pilin ComGG -
  GOM46_RS01150 (GOM46_01135) - 226078..226779 (+) 702 WP_235083716.1 histidine phosphatase family protein -
  GOM46_RS01155 (GOM46_01140) - 226971..228677 (+) 1707 WP_235083717.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16437.14 Da        Isoelectric Point: 10.6883

>NTDB_id=405039 GOM46_RS01130 WP_029689590.1 224481..224915(+) (comGD/cglD) [Streptococcus infantis strain SO]
MQSKRQVKQLRIRAFTVLESLLVLGIVSLLALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSLAGQQKMNLMLEERS
IDNGYRKLAIPKGIQLKFNQSITFDKAGGNSSLASVKFQTRKEVVRYQLYLGNGKIKRIQEAKN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=405039 GOM46_RS01130 WP_029689590.1 224481..224915(+) (comGD/cglD) [Streptococcus infantis strain SO]
ATGCAAAGCAAAAGACAAGTCAAACAGTTGCGGATTAGGGCTTTTACTGTGCTAGAAAGTCTATTGGTATTAGGAATAGT
CAGTCTGTTAGCTTTGGGCTTGTCAAGTTCAGTTCAGTCCACTTTTGCGGCTGTGGAGGAGCAGATTTTCTTTATGGAGT
TTGAGGAACTATATAGAGAAACGCAGAAACGGAGTCTGGCTGGTCAGCAAAAGATGAACTTAATGTTAGAAGAGAGAAGT
ATTGATAATGGTTACCGAAAATTAGCCATCCCTAAAGGAATTCAACTGAAGTTCAATCAGTCAATCACCTTTGACAAGGC
TGGAGGGAATTCATCTCTGGCAAGTGTGAAATTTCAAACAAGGAAAGAGGTAGTTCGTTACCAACTATATCTAGGAAATG
GAAAGATTAAACGTATTCAAGAAGCAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

72.917

100

0.729
  comGD/cglD Streptococcus mitis SK321

75.188

92.361

0.694
  comGD/cglD Streptococcus pneumoniae Rx1

75.188

92.361

0.694
  comGD/cglD Streptococcus pneumoniae D39

75.188

92.361

0.694
  comGD/cglD Streptococcus pneumoniae R6

75.188

92.361

0.694
  comGD/cglD Streptococcus pneumoniae TIGR4

74.436

92.361

0.687
  comYD Streptococcus gordonii str. Challis substr. CH1

56.818

91.667

0.521
  comYD Streptococcus mutans UA159

50.382

90.972

0.458
  comYD Streptococcus mutans UA140

50.382

90.972

0.458

Multiple sequence alignment