Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GNX71_RS26660 Genome accession   NZ_CP046508
Coordinates   5742009..5743241 (+) Length   410 a.a.
NCBI ID   WP_206175204.1    Uniprot ID   -
Organism   Variovorax sp. RKNM96     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5737009..5748241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX71_RS26630 (GNX71_26575) cgtA 5737101..5738177 (-) 1077 WP_206175201.1 Obg family GTPase CgtA -
  GNX71_RS26635 (GNX71_26580) rpmA 5738249..5738509 (-) 261 WP_013543198.1 50S ribosomal protein L27 -
  GNX71_RS26640 (GNX71_26585) rplU 5738522..5738833 (-) 312 WP_042578903.1 50S ribosomal protein L21 -
  GNX71_RS26645 (GNX71_26590) - 5739017..5740009 (+) 993 WP_206175202.1 polyprenyl synthetase family protein -
  GNX71_RS26655 (GNX71_26600) pilB 5740251..5741984 (+) 1734 WP_206175203.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GNX71_RS26660 (GNX71_26605) pilC 5742009..5743241 (+) 1233 WP_206175204.1 type II secretion system F family protein Machinery gene
  GNX71_RS26665 (GNX71_26610) - 5743241..5744206 (+) 966 WP_206175205.1 A24 family peptidase -
  GNX71_RS26670 (GNX71_26615) coaE 5744217..5744825 (+) 609 WP_206175206.1 dephospho-CoA kinase -
  GNX71_RS26675 (GNX71_26620) - 5744899..5746392 (+) 1494 WP_206175207.1 MBOAT family protein -
  GNX71_RS26680 (GNX71_26625) - 5746405..5747418 (+) 1014 WP_241027058.1 hypothetical protein -
  GNX71_RS26685 (GNX71_26630) zapD 5747455..5748210 (+) 756 WP_206175209.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44917.62 Da        Isoelectric Point: 9.6713

>NTDB_id=404774 GNX71_RS26660 WP_206175204.1 5742009..5743241(+) (pilC) [Variovorax sp. RKNM96]
MATVASPRSSQVTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQL
ATMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLAT
YMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGGIGGG
FYFFMQAWKRNERMQKFMDRLVLRIPIFGTLIEKSCIARWTRTLATMFAAGVPLVEALDSVGGASGNSVYGDATAKIQQE
VSTGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMY
LPIFKLGQVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=404774 GNX71_RS26660 WP_206175204.1 5742009..5743241(+) (pilC) [Variovorax sp. RKNM96]
ATGGCAACAGTGGCATCCCCCCGCTCCTCCCAGGTCACGCACAAGGAATTTGTCTTCGAGTGGGAAGGCAAGGACCGCAA
TGGCAAGCTGGTGCGCGGCGAACTCCGGGCCGCCGGCGAGAACCAGGTGCAAGCGGCGCTGCGCCGCCAGGGTGTGCTCG
CCAGCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGGCCATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGTTG
GCGACGATGATGAAGGCCGGCGTGCCGTTGATGCAGTCCTTCGACATCGTCGGTCGCGGCAATGCGAATGCGAGCGTTGC
GAAGCTGCTCAACGACATCCGCAGCGATGTGGAAACCGGCACGTCACTTTCGTCGGCCTTTCGCAAGTTCCCGAAGTATT
TCGACAACCTGTACTGCAATCTGGTGGAAGCGGGCGAAGCGGCCGGCATCCTGGAAGATCTGCTGGACCGCCTTGCCACC
TACATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCATTGATGTATCCGACTTCCGTCGTCGTTGTCGCGTT
CGTGGTGGTCGCGATCATCATGATTTTCGTGATTCCGGCCTTCAAGCAGGTATTCACTTCGTTCGGCGCCGACCTGCCCG
CCCCCACATTGTTCGTGATGGCCATGAGCGAGTTCTTCGTGTCTTACTGGTGGCTGATCTTCGGGGGTATCGGCGGCGGG
TTCTACTTTTTCATGCAGGCGTGGAAACGCAACGAGCGCATGCAAAAGTTCATGGACCGCCTCGTGCTGCGCATTCCGAT
TTTTGGCACGCTGATTGAAAAATCCTGCATCGCACGCTGGACACGAACGCTGGCAACGATGTTTGCAGCCGGCGTCCCCT
TGGTCGAGGCTCTCGATTCAGTGGGCGGTGCCTCCGGCAATTCCGTCTATGGCGATGCCACCGCCAAGATCCAGCAAGAA
GTCTCGACCGGCACCAGCCTGACCGCGGCCATGACCAACGTCAATCTCTTCCCCTCGATGGTGATCCAGATGACCGCCAT
CGGCGAAGAATCCGGCTCCATCGACCACATGCTGGGCAAAGCTGCCGACTTCTACGAATCCGAGGTGGACGACATGGTCG
CGGGCCTCTCCAGCCTCATGGAGCCCATCATCATCGTGTTCCTCGGCACGATCATCGGCGGCATCGTAGTGTCGATGTAC
CTGCCCATCTTCAAGCTCGGCCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.218

98.537

0.524
  pilG Neisseria gonorrhoeae MS11

52.141

96.829

0.505
  pilC Acinetobacter baylyi ADP1

51.759

97.073

0.502
  pilG Neisseria meningitidis 44/76-A

51.889

96.829

0.502
  pilC Legionella pneumophila strain ERS1305867

49.749

97.073

0.483
  pilC Acinetobacter baumannii D1279779

49.874

96.829

0.483
  pilC Vibrio cholerae strain A1552

41.457

97.073

0.402
  pilC Vibrio campbellii strain DS40M4

40

97.561

0.39
  pilC Thermus thermophilus HB27

37.965

98.293

0.373

Multiple sequence alignment