Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HXS78_RS18785 Genome accession   NZ_CP058308
Coordinates   3910251..3910691 (+) Length   146 a.a.
NCBI ID   WP_000360895.1    Uniprot ID   B7LFX5
Organism   Escherichia coli strain AMSCJX04     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3905251..3915691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS78_RS18765 (HXS78_18780) aroP 3906249..3907622 (+) 1374 WP_000969914.1 aromatic amino acid transporter AroP -
  HXS78_RS18770 (HXS78_18785) ampE 3907665..3908519 (-) 855 WP_000172006.1 beta-lactamase regulator AmpE -
  HXS78_RS18775 (HXS78_18790) ampD 3908516..3909067 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HXS78_RS18780 (HXS78_18795) nadC 3909155..3910048 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HXS78_RS18785 (HXS78_18800) pilA 3910251..3910691 (+) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  HXS78_RS18790 (HXS78_18805) pilB 3910701..3912086 (+) 1386 WP_001025173.1 type II secretion system protein GspE Machinery gene
  HXS78_RS18795 (HXS78_18810) hofC 3912076..3913278 (+) 1203 WP_000157234.1 protein transport protein HofC -
  HXS78_RS18800 (HXS78_18815) guaC 3913313..3914356 (-) 1044 WP_001217338.1 GMP reductase -
  HXS78_RS18805 (HXS78_18820) - 3914512..3914556 (-) 45 WP_120795372.1 protein YacM -
  HXS78_RS18810 (HXS78_18825) coaE 3914581..3915201 (+) 621 WP_001269527.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15602.71 Da        Isoelectric Point: 4.3927

>NTDB_id=404774 HXS78_RS18785 WP_000360895.1 3910251..3910691(+) (pilA) [Escherichia coli strain AMSCJX04]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=404774 HXS78_RS18785 WP_000360895.1 3910251..3910691(+) (pilA) [Escherichia coli strain AMSCJX04]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363

Multiple sequence alignment