Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B565_RS01830 Genome accession   NC_015424
Coordinates   382412..383653 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii B565     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377412..388653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B565_RS01805 (B565_0353) mutT 379404..379808 (+) 405 WP_005355106.1 8-oxo-dGTP diphosphatase MutT -
  B565_RS01810 (B565_0354) yacG 379886..380080 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  B565_RS01815 (B565_0355) zapD 380090..380812 (-) 723 WP_005355104.1 cell division protein ZapD -
  B565_RS01820 (B565_0356) coaE 380850..381464 (-) 615 WP_005355102.1 dephospho-CoA kinase -
  B565_RS01825 (B565_0357) pilD 381478..382350 (-) 873 WP_013723412.1 prepilin peptidase Machinery gene
  B565_RS01830 (B565_0358) pilC 382412..383653 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  B565_RS01835 (B565_0359) pilB 383894..385600 (-) 1707 WP_013723413.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  B565_RS20610 - 385604..386029 (-) 426 WP_041915402.1 pilin -
  B565_RS01845 (B565_0360) nadC 386345..387220 (-) 876 WP_013723414.1 carboxylating nicotinate-nucleotide diphosphorylase -
  B565_RS01850 (B565_0361) - 387224..387694 (-) 471 WP_005355088.1 retropepsin-like aspartic protease family protein -
  B565_RS01855 (B565_0362) ampD 387825..388400 (+) 576 WP_005355087.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=40445 B565_RS01830 WP_005336136.1 382412..383653(-) (pilC) [Aeromonas veronii B565]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=40445 B565_RS01830 WP_005336136.1 382412..383653(-) (pilC) [Aeromonas veronii B565]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACAGAACTGCGCAAGCAGGGAGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACTGGCACCCCCATGTCGGAAGCGCTGCGTCGCCATCCCC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGGGCGCTGGAAACCATCTACGACCGTATC
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCTATCGTGGTGACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TACCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGAGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCTCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGTAACTATGTCTATCGCACCGCGGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTAGGGGTACTGGTCGGCGGCATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment