Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   B565_RS01825 Genome accession   NC_015424
Coordinates   381478..382350 (-) Length   290 a.a.
NCBI ID   WP_013723412.1    Uniprot ID   -
Organism   Aeromonas veronii B565     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376478..387350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B565_RS01800 (B565_0352) secA 376609..379329 (+) 2721 WP_005336144.1 preprotein translocase subunit SecA -
  B565_RS01805 (B565_0353) mutT 379404..379808 (+) 405 WP_005355106.1 8-oxo-dGTP diphosphatase MutT -
  B565_RS01810 (B565_0354) yacG 379886..380080 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  B565_RS01815 (B565_0355) zapD 380090..380812 (-) 723 WP_005355104.1 cell division protein ZapD -
  B565_RS01820 (B565_0356) coaE 380850..381464 (-) 615 WP_005355102.1 dephospho-CoA kinase -
  B565_RS01825 (B565_0357) pilD 381478..382350 (-) 873 WP_013723412.1 prepilin peptidase Machinery gene
  B565_RS01830 (B565_0358) pilC 382412..383653 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  B565_RS01835 (B565_0359) pilB 383894..385600 (-) 1707 WP_013723413.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  B565_RS20610 - 385604..386029 (-) 426 WP_041915402.1 pilin -
  B565_RS01845 (B565_0360) nadC 386345..387220 (-) 876 WP_013723414.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32142.41 Da        Isoelectric Point: 6.7414

>NTDB_id=40444 B565_RS01825 WP_013723412.1 381478..382350(-) (pilD) [Aeromonas veronii B565]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVISPGWGALAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTSKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=40444 B565_RS01825 WP_013723412.1 381478..382350(-) (pilD) [Aeromonas veronii B565]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTTGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTGATCTCACCGGGTTGGGGTG
CCCTTGCCGCCCTGCTGCTGACCTGGGTATTGGTGGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTACCGCTGGCAGATGCCGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTAGTAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTCCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCCGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.976

98.966

0.603
  pilD Vibrio campbellii strain DS40M4

55.401

98.966

0.548
  pilD Acinetobacter baumannii D1279779

53.047

96.207

0.51
  pilD Acinetobacter nosocomialis M2

53.047

96.207

0.51
  pilD Neisseria gonorrhoeae MS11

47.985

94.138

0.452

Multiple sequence alignment