Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GNY17_RS14910 | Genome accession | NZ_CP046411 |
| Coordinates | 2905464..2905922 (-) | Length | 152 a.a. |
| NCBI ID | WP_025518565.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 19-021-D1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2900464..2910922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNY17_RS14890 (GNY17_14890) | coaE | 2900976..2901590 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| GNY17_RS14895 (GNY17_14895) | pilD | 2901591..2902460 (-) | 870 | WP_005493974.1 | prepilin peptidase | Machinery gene |
| GNY17_RS14900 (GNY17_14900) | pilC | 2902525..2903748 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| GNY17_RS14905 (GNY17_14905) | pilB | 2903773..2905458 (-) | 1686 | WP_025792845.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GNY17_RS14910 (GNY17_14910) | pilA | 2905464..2905922 (-) | 459 | WP_025518565.1 | pilin | Machinery gene |
| GNY17_RS14915 (GNY17_14915) | nadC | 2906185..2907072 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GNY17_RS14920 (GNY17_14920) | ampD | 2907165..2907716 (+) | 552 | WP_025792846.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GNY17_RS14925 (GNY17_14925) | pdhR | 2908122..2908889 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15847.98 Da Isoelectric Point: 6.9498
>NTDB_id=404157 GNY17_RS14910 WP_025518565.1 2905464..2905922(-) (pilA) [Vibrio parahaemolyticus strain 19-021-D1]
MKHSKQKKQQGFTLIELMIVVAVIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAFAVENGKFPDGASTNETEAD
LGVPTTIPSGSITFTAASSSAGTIKFAFDSAGVSNLVTSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKHSKQKKQQGFTLIELMIVVAVIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAFAVENGKFPDGASTNETEAD
LGVPTTIPSGSITFTAASSSAGTIKFAFDSAGVSNLVTSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=404157 GNY17_RS14910 WP_025518565.1 2905464..2905922(-) (pilA) [Vibrio parahaemolyticus strain 19-021-D1]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
GGCATCTATAGCTATTCCACAGTACCAAAAATACGTTGCGAAGTCCGAGGTAGCATCAGCTCTTGCAACTCTGACTGGCG
TAAAAACTAACGTAGAAGCATTTGCTGTCGAAAATGGTAAATTCCCAGATGGTGCTAGTACAAATGAAACCGAAGCAGAC
TTGGGTGTTCCAACCACTATTCCATCAGGTTCAATAACCTTTACTGCGGCAAGCTCTTCCGCTGGTACAATCAAGTTTGC
GTTTGATAGCGCAGGAGTGAGTAACTTGGTTACTAGTAAAAACTTCGAGCTGGTACGTGCATCTGATGGAACATGGACAT
GTCAAGGTTCTAGCGCAAGCCCGGTAACAGATGATTTGTTACCAAAAAATTGTCGTTAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
GGCATCTATAGCTATTCCACAGTACCAAAAATACGTTGCGAAGTCCGAGGTAGCATCAGCTCTTGCAACTCTGACTGGCG
TAAAAACTAACGTAGAAGCATTTGCTGTCGAAAATGGTAAATTCCCAGATGGTGCTAGTACAAATGAAACCGAAGCAGAC
TTGGGTGTTCCAACCACTATTCCATCAGGTTCAATAACCTTTACTGCGGCAAGCTCTTCCGCTGGTACAATCAAGTTTGC
GTTTGATAGCGCAGGAGTGAGTAACTTGGTTACTAGTAAAAACTTCGAGCTGGTACGTGCATCTGATGGAACATGGACAT
GTCAAGGTTCTAGCGCAAGCCCGGTAACAGATGATTTGTTACCAAAAAATTGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.718 |
100 |
0.5 |
| pilA | Vibrio cholerae strain A1552 |
48.718 |
100 |
0.5 |
| pilA | Vibrio cholerae C6706 |
48.718 |
100 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
42.581 |
100 |
0.434 |
| pilA | Acinetobacter baumannii strain A118 |
42.759 |
95.395 |
0.408 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44.03 |
88.158 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.426 |
92.763 |
0.375 |
| pilA | Acinetobacter nosocomialis M2 |
37.333 |
98.684 |
0.368 |