Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GK020_RS01670 | Genome accession | NZ_CP046392 |
| Coordinates | 360147..361373 (-) | Length | 408 a.a. |
| NCBI ID | WP_016659656.1 | Uniprot ID | V2UF65 |
| Organism | Acinetobacter indicus strain WMB-7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 355147..366373
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GK020_RS01645 | - | 356552..356875 (+) | 324 | WP_005181767.1 | pyrimidine/purine nucleoside phosphorylase | - |
| GK020_RS01650 | rlmB | 356981..357733 (+) | 753 | WP_075167607.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| GK020_RS01655 | - | 357751..358671 (+) | 921 | WP_045796176.1 | DMT family transporter | - |
| GK020_RS01660 | coaE | 358668..359276 (-) | 609 | WP_104989177.1 | dephospho-CoA kinase | - |
| GK020_RS01665 | pilD | 359287..360147 (-) | 861 | WP_005181774.1 | prepilin peptidase | Machinery gene |
| GK020_RS01670 | pilC | 360147..361373 (-) | 1227 | WP_016659656.1 | type II secretion system F family protein | Machinery gene |
| GK020_RS01675 | pilB | 361404..363110 (-) | 1707 | WP_005181778.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GK020_RS01680 | tpiA | 363400..364191 (+) | 792 | WP_104989176.1 | triose-phosphate isomerase | - |
| GK020_RS01685 | secG | 364205..364534 (+) | 330 | WP_104989175.1 | preprotein translocase subunit SecG | - |
| GK020_RS01710 | rimP | 365449..365973 (+) | 525 | WP_045796174.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44895.36 Da Isoelectric Point: 9.9079
>NTDB_id=403788 GK020_RS01670 WP_016659656.1 360147..361373(-) (pilC) [Acinetobacter indicus strain WMB-7]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=403788 GK020_RS01670 WP_016659656.1 360147..361373(-) (pilC) [Acinetobacter indicus strain WMB-7]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGGAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCGGTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCAGCCTTCA
CCAAAATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCAGTTTGCCATGCGGGTCACGGATAAATTCCCATCCATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGGAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCGGTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCAGCCTTCA
CCAAAATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCAGTTTGCCATGCGGGTCACGGATAAATTCCCATCCATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
88.48 |
100 |
0.885 |
| pilC | Acinetobacter baylyi ADP1 |
84.069 |
100 |
0.841 |
| pilC | Pseudomonas stutzeri DSM 10701 |
60.688 |
99.755 |
0.605 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.593 |
99.265 |
0.522 |
| pilG | Neisseria gonorrhoeae MS11 |
47.99 |
97.549 |
0.468 |
| pilG | Neisseria meningitidis 44/76-A |
47.99 |
97.549 |
0.468 |
| pilC | Vibrio cholerae strain A1552 |
43.137 |
100 |
0.431 |
| pilC | Vibrio campbellii strain DS40M4 |
42.822 |
99.02 |
0.424 |
| pilC | Thermus thermophilus HB27 |
36.658 |
98.284 |
0.36 |