Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | GL184_RS01770 | Genome accession | NZ_CP046356 |
| Coordinates | 331055..331450 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282467.1 | Uniprot ID | A0A098Z0L0 |
| Organism | Streptococcus pneumoniae strain 521 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 322925..334971 | 331055..331450 | within | 0 |
Gene organization within MGE regions
Location: 322925..334971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GL184_RS01695 (GL184_01720) | - | 322925..323641 (+) | 717 | WP_000532876.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| GL184_RS01700 (GL184_01725) | - | 323765..324236 (+) | 472 | Protein_306 | MarR family winged helix-turn-helix transcriptional regulator | - |
| GL184_RS01705 (GL184_01730) | - | 324253..325074 (+) | 822 | Protein_307 | ABC transporter permease | - |
| GL184_RS01710 (GL184_01735) | - | 325129..326112 (+) | 984 | Protein_308 | ATP-binding cassette domain-containing protein | - |
| GL184_RS01720 (GL184_01745) | - | 326178..326540 (+) | 363 | WP_000078805.1 | DUF2200 domain-containing protein | - |
| GL184_RS01725 (GL184_01750) | - | 326537..327040 (+) | 504 | WP_000800947.1 | phosphatase PAP2 family protein | - |
| GL184_RS01730 (GL184_01755) | - | 327154..327600 (+) | 447 | WP_000776589.1 | LytTR family DNA-binding domain-containing protein | - |
| GL184_RS01735 (GL184_01760) | - | 327606..328280 (+) | 675 | WP_024477660.1 | LiaF transmembrane domain-containing protein | - |
| GL184_RS01740 (GL184_01765) | - | 328441..328632 (+) | 192 | WP_000291826.1 | cell wall-binding protein | - |
| GL184_RS11000 | - | 328689..328835 (-) | 147 | WP_000692801.1 | hypothetical protein | - |
| GL184_RS01750 (GL184_01770) | - | 328929..329228 (+) | 300 | WP_001818001.1 | DUF4651 domain-containing protein | - |
| GL184_RS01755 (GL184_01775) | - | 329225..329542 (+) | 318 | WP_000615775.1 | thioredoxin family protein | - |
| GL184_RS01760 (GL184_01780) | ytpR | 329558..330184 (+) | 627 | WP_024477659.1 | YtpR family tRNA-binding protein | - |
| GL184_RS01765 (GL184_01785) | - | 330217..330978 (+) | 762 | WP_001107755.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| GL184_RS01770 (GL184_01790) | ssbB/cilA | 331055..331450 (+) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| GL184_RS01775 (GL184_01795) | groES | 331720..332004 (+) | 285 | WP_000917330.1 | co-chaperone GroES | - |
| GL184_RS01780 (GL184_01800) | groL | 332020..333642 (+) | 1623 | WP_000031585.1 | chaperonin GroEL | - |
| GL184_RS01785 (GL184_01805) | - | 333742..334971 (-) | 1230 | WP_000436406.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14925.89 Da Isoelectric Point: 5.9409
>NTDB_id=403102 GL184_RS01770 WP_000282467.1 331055..331450(+) (ssbB/cilA) [Streptococcus pneumoniae strain 521]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=403102 GL184_RS01770 WP_000282467.1 331055..331450(+) (ssbB/cilA) [Streptococcus pneumoniae strain 521]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
98.473 |
100 |
0.985 |
| ssbA | Streptococcus mutans UA159 |
74.809 |
100 |
0.748 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.821 |
85.496 |
0.511 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |