Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB89_RS06100 Genome accession   NZ_CP046329
Coordinates   1327466..1328731 (-) Length   421 a.a.
NCBI ID   WP_011787902.1    Uniprot ID   A0A6N3J110
Organism   Shewanella putrefaciens strain FDAARGOS_681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1322466..1333731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB89_RS06070 (FOB89_06070) - 1322786..1323322 (-) 537 WP_011920040.1 thioredoxin family protein -
  FOB89_RS06075 (FOB89_06075) mutT 1323829..1324233 (-) 405 WP_011787897.1 8-oxo-dGTP diphosphatase MutT -
  FOB89_RS06080 (FOB89_06080) yacG 1324285..1324494 (-) 210 WP_011920039.1 DNA gyrase inhibitor YacG -
  FOB89_RS06085 (FOB89_06085) zapD 1324652..1325386 (-) 735 WP_011920038.1 cell division protein ZapD -
  FOB89_RS06090 (FOB89_06090) coaE 1325379..1325996 (-) 618 WP_011920037.1 dephospho-CoA kinase -
  FOB89_RS06095 (FOB89_06095) pilD 1326340..1327266 (-) 927 WP_011920036.1 prepilin peptidase Machinery gene
  FOB89_RS06100 (FOB89_06100) pilC 1327466..1328731 (-) 1266 WP_011787902.1 type II secretion system F family protein Machinery gene
  FOB89_RS06105 (FOB89_06105) pilB 1329182..1330891 (-) 1710 WP_011920035.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB89_RS20930 (FOB89_06110) pilA/pilAI 1330975..1331421 (-) 447 WP_011920034.1 pilin Machinery gene
  FOB89_RS06115 (FOB89_06115) nadC 1332341..1333228 (-) 888 WP_011787905.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46325.74 Da        Isoelectric Point: 10.2387

>NTDB_id=402733 FOB89_RS06100 WP_011787902.1 1327466..1328731(-) (pilC) [Shewanella putrefaciens strain FDAARGOS_681]
MATATTVKKPRPKKIEPKSQPKIFTFEWKGTNRDGKKTGGELKGATVAEVKSQLKSQGVNPKVVRKKASPFFARNPDIKP
MDIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSW
YLFFIAITVGIWLFVRAHRNSQMVRDRVDEFVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=402733 FOB89_RS06100 WP_011787902.1 1327466..1328731(-) (pilC) [Shewanella putrefaciens strain FDAARGOS_681]
ATGGCTACGGCAACGACAGTAAAAAAGCCTCGCCCAAAGAAGATTGAGCCCAAAAGCCAACCAAAGATTTTTACCTTTGA
ATGGAAAGGCACTAACCGCGATGGCAAAAAAACGGGTGGTGAGTTAAAGGGTGCAACAGTTGCAGAGGTAAAAAGCCAGC
TCAAATCCCAAGGAGTAAATCCTAAAGTCGTACGAAAAAAAGCATCTCCTTTCTTTGCCCGTAATCCTGATATCAAGCCC
ATGGATATCGCGATGGCAACTCGCCAGATAGCGACTATGCTGGCCGCCGGCGTTCCGCTTGTGACCACAATAGAAATATT
GGGGCGTGGCCATGAAAAACTCAAAATGCGCGATCTGTTAGGGACAATTCTGTCAGAGATTCAATCGGGTATTCCGCTAT
CAGACGCCCTGCGCCCCCATAGGCGTTATTTTGATGATCTCTATGTAGACTTAGTGGCAGCAGGTGAACACTCAGGTTCG
CTCGATGCGGTATTTGATCGCATTGCAACCTACAGGGAAAAAGCGGAGCAGCTAAAATCTAAAATCAAAAAAGCCATGTT
TTATCCCGCCGCCGTTGTGGTAGTCGCTATTTTAGTGACCACATTGTTATTACTCTTTGTCGTACCTCAGTTCGAAGATA
TTTTTAAAGGATTTGGCGCAGAACTCCCCGCCTTTACACAGATGATCATTGGTATCTCGCGATGGTTGCAAAGCTCTTGG
TATCTCTTTTTCATTGCGATTACGGTGGGAATTTGGTTATTTGTCCGTGCCCATCGCAATTCACAAATGGTTCGTGACCG
TGTTGATGAGTTTGTACTTAAGATCCCTGTTATCGGCGAAATTCTGCATAAGGCGGCCATGGCGCGCTTTTCTCGTACCT
TAGCCACCACCTTTGCGGCAGGTGTGCCGTTGATTGATGGGATGGAATCCGCAGCGGGAGCATCAGGTAATGCCGTATAT
CGCAAAGCACTGTTAAAAGTACGCCAAGAGGTCATGGCTGGTATGCAAATGAACGTCGCGATGCGTACTACGGGTTTGTT
CCCCGATATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCTGGATCGCTAGATAATATGCTAAATAAGGTGGCTAATA
TTTATGAAATGCAAGTCGATGACGCTGTGGATGGTTTATCGAGTCTAATTGAACCCATTATGATGGTGGTGATTGGCACC
CTTGTGGGTGGTTTAATTGTGGGAATGTATCTCCCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3J110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

93.824

0.513
  pilC Acinetobacter baylyi ADP1

50.882

94.299

0.48
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Acinetobacter baumannii D1279779

50.251

94.537

0.475
  pilC Vibrio cholerae strain A1552

46.867

94.774

0.444
  pilC Vibrio campbellii strain DS40M4

44.499

97.15

0.432
  pilG Neisseria gonorrhoeae MS11

41.294

95.487

0.394
  pilG Neisseria meningitidis 44/76-A

41.191

95.724

0.394

Multiple sequence alignment