Detailed information NTG0402732

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FOB89_RS06095
• Genome accession: NZ_CP046329
• Coordinates: 1326340..1327266 (-)
• Length: 308 a.a.
• NCBI ID: WP_011920036.1
• Uniprot ID: -
• Organism: Shewanella putrefaciens strain FDAARGOS_681
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1321340..1332266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB89_RS06065 (FOB89_06065)	-	1321448..1322374 (+)	927	WP_011787895.1	exopolyphosphatase	-
FOB89_RS06070 (FOB89_06070)	-	1322786..1323322 (-)	537	WP_011920040.1	thioredoxin family protein	-
FOB89_RS06075 (FOB89_06075)	mutT	1323829..1324233 (-)	405	WP_011787897.1	8-oxo-dGTP diphosphatase MutT	-
FOB89_RS06080 (FOB89_06080)	yacG	1324285..1324494 (-)	210	WP_011920039.1	DNA gyrase inhibitor YacG	-
FOB89_RS06085 (FOB89_06085)	zapD	1324652..1325386 (-)	735	WP_011920038.1	cell division protein ZapD	-
FOB89_RS06090 (FOB89_06090)	coaE	1325379..1325996 (-)	618	WP_011920037.1	dephospho-CoA kinase	-
FOB89_RS06095 (FOB89_06095)	pilD	1326340..1327266 (-)	927	WP_011920036.1	prepilin peptidase	Machinery gene
FOB89_RS06100 (FOB89_06100)	pilC	1327466..1328731 (-)	1266	WP_011787902.1	type II secretion system F family protein	Machinery gene
FOB89_RS06105 (FOB89_06105)	pilB	1329182..1330891 (-)	1710	WP_011920035.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FOB89_RS20930 (FOB89_06110)	pilA/pilAI	1330975..1331421 (-)	447	WP_011920034.1	pilin	Machinery gene

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34360.68 Da
• Isoelectric Point: 6.5934

>NTDB_id=402732 FOB89_RS06095 WP_011920036.1 1326340..1327266(-) (pilD) [Shewanella putrefaciens strain FDAARGOS_681]
MTEFITLLGQSFEQSPWLFVTLSFIFAATIGSFLNVVIHRLPIMMKREWQQECNQYLQEYHADIVNQVGIDRLNKPIDSY
PEKYNIVVPGSACPQCKTAIKPWHNMPVLGWLILRGKCAACHAPISTRYPIIELITGLLIAALAWHFGPSWQFVFASLLT
FVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGYLSLWSIFWVFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGIGMIISKRNQMDNPIPFGPYIAAAGWIALVWGNTIVDWYLGTL

Nucleotide

• Length: 927 bp

>NTDB_id=402732 FOB89_RS06095 WP_011920036.1 1326340..1327266(-) (pilD) [Shewanella putrefaciens strain FDAARGOS_681]
ATGACTGAATTTATCACTTTATTAGGCCAATCTTTTGAACAGAGTCCTTGGCTCTTCGTCACCTTAAGCTTTATTTTTGC
CGCGACTATTGGCAGTTTTCTGAATGTGGTCATCCACCGACTCCCTATCATGATGAAGCGTGAATGGCAGCAGGAATGTA
ATCAATATTTACAGGAATACCATGCCGATATCGTTAACCAAGTCGGTATCGATAGGCTTAATAAACCCATAGATAGCTAT
CCCGAAAAGTACAATATTGTGGTGCCAGGCTCAGCTTGCCCTCAGTGTAAAACCGCCATCAAACCTTGGCATAATATGCC
TGTGCTCGGTTGGTTAATCCTTAGGGGGAAATGCGCCGCCTGTCATGCACCTATCTCGACCCGTTATCCGATTATTGAAT
TAATCACAGGTTTACTGATCGCTGCTTTAGCTTGGCATTTTGGCCCAAGTTGGCAATTTGTTTTTGCCTCTTTACTCACC
TTTGTATTGATTGCGCTGACAGGTATAGATCTGGATGAAATGTTGTTACCGGATCAGTTAACACTGCCCCTACTGTGGCT
TGGGCTATTACTCAATTTACACCATACCTTTGCTAGCCCAACGGATGCCATTATCGGTGCAGCCGCAGGCTATTTAAGCC
TATGGTCAATTTTCTGGGTGTTTAAGTTACTCACAGGCAAAGAAGGTATGGGCTATGGCGACTTTAAACTGTTGGCCGTT
TTTGGTGCTTGGCTTGGCTGGCAAATGTTGCCACTGGTGATTTTACTCTCCTCATTAGTGGGTGCTGTTGTGGGCATTGG
CATGATTATCAGCAAACGTAATCAGATGGATAACCCTATTCCCTTTGGCCCTTATATTGCCGCCGCAGGCTGGATTGCAC
TGGTTTGGGGAAACACTATCGTCGACTGGTATTTAGGGACACTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (159-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.824	97.727	0.516
pilD	Vibrio campbellii strain DS40M4	51.333	97.403	0.5
pilD	Acinetobacter baumannii D1279779	48.789	93.831	0.458
pilD	Acinetobacter nosocomialis M2	48.789	93.831	0.458
pilD	Neisseria gonorrhoeae MS11	43.793	94.156	0.412