Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | FOC36_RS12325 | Genome accession | NZ_CP046307 |
| Coordinates | 2591364..2591639 (+) | Length | 91 a.a. |
| NCBI ID | WP_005472883.1 | Uniprot ID | A0AAE4HT04 |
| Organism | Enterococcus gallinarum strain FDAARGOS_728 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2586364..2596639
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC36_RS12300 (FOC36_12300) | - | 2586497..2587708 (+) | 1212 | WP_029487323.1 | ABC transporter permease | - |
| FOC36_RS12305 (FOC36_12305) | - | 2587813..2588592 (+) | 780 | WP_003128432.1 | phosphotransferase family protein | - |
| FOC36_RS12310 (FOC36_12310) | trmB | 2588646..2589308 (+) | 663 | WP_021149035.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| FOC36_RS12315 (FOC36_12315) | comGA | 2589420..2590361 (+) | 942 | WP_005472888.1 | competence type IV pilus ATPase ComGA | - |
| FOC36_RS12320 (FOC36_12320) | comGB | 2590336..2591367 (+) | 1032 | WP_003128436.1 | competence type IV pilus assembly protein ComGB | - |
| FOC36_RS12325 (FOC36_12325) | comYC | 2591364..2591639 (+) | 276 | WP_005472883.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FOC36_RS12330 (FOC36_12330) | comGD | 2591608..2592087 (+) | 480 | WP_003128438.1 | competence type IV pilus minor pilin ComGD | - |
| FOC36_RS12335 (FOC36_12335) | - | 2592068..2592379 (+) | 312 | WP_029487319.1 | hypothetical protein | - |
| FOC36_RS12340 (FOC36_12340) | comGF | 2592369..2592782 (+) | 414 | WP_003128440.1 | competence type IV pilus minor pilin ComGF | - |
| FOC36_RS15965 (FOC36_12345) | comGG | 2592832..2593110 (+) | 279 | WP_050801522.1 | competence type IV pilus minor pilin ComGG | - |
| FOC36_RS12350 (FOC36_12350) | - | 2593285..2594292 (+) | 1008 | WP_003128442.1 | class I SAM-dependent methyltransferase | - |
| FOC36_RS12355 (FOC36_12355) | - | 2594317..2595501 (+) | 1185 | WP_003128443.1 | acetate/propionate family kinase | - |
| FOC36_RS12360 (FOC36_12360) | - | 2595715..2596026 (-) | 312 | WP_005472877.1 | DUF1048 domain-containing protein | - |
| FOC36_RS12365 (FOC36_12365) | - | 2596036..2596377 (-) | 342 | WP_003128445.1 | DUF1048 domain-containing protein | - |
Sequence
Protein
Download Length: 91 a.a. Molecular weight: 10492.31 Da Isoelectric Point: 6.4633
>NTDB_id=402520 FOC36_RS12325 WP_005472883.1 2591364..2591639(+) (comYC) [Enterococcus gallinarum strain FDAARGOS_728]
MRKLKHQGFTLVEMLIVLLVISILILLFVPNLSAQRTVIDEKGNVAIVKVVETQIELFQLNENRTPTRQELLAGNYVTEE
QYAIYLAHRNE
MRKLKHQGFTLVEMLIVLLVISILILLFVPNLSAQRTVIDEKGNVAIVKVVETQIELFQLNENRTPTRQELLAGNYVTEE
QYAIYLAHRNE
Nucleotide
Download Length: 276 bp
>NTDB_id=402520 FOC36_RS12325 WP_005472883.1 2591364..2591639(+) (comYC) [Enterococcus gallinarum strain FDAARGOS_728]
ATGAGAAAATTGAAGCATCAAGGGTTCACATTGGTGGAGATGCTGATTGTACTGTTAGTGATCAGTATTTTGATTTTATT
GTTTGTACCAAACTTATCCGCACAACGTACAGTGATAGATGAGAAAGGAAATGTGGCAATCGTCAAAGTCGTAGAAACCC
AGATTGAGTTGTTCCAGCTTAATGAGAATCGAACACCTACTCGACAAGAATTACTAGCTGGAAATTATGTAACGGAGGAG
CAGTATGCGATTTACCTTGCCCATCGGAACGAATAG
ATGAGAAAATTGAAGCATCAAGGGTTCACATTGGTGGAGATGCTGATTGTACTGTTAGTGATCAGTATTTTGATTTTATT
GTTTGTACCAAACTTATCCGCACAACGTACAGTGATAGATGAGAAAGGAAATGTGGCAATCGTCAAAGTCGTAGAAACCC
AGATTGAGTTGTTCCAGCTTAATGAGAATCGAACACCTACTCGACAAGAATTACTAGCTGGAAATTATGTAACGGAGGAG
CAGTATGCGATTTACCTTGCCCATCGGAACGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
50.538 |
100 |
0.516 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
49.462 |
100 |
0.505 |
| comYC | Streptococcus mutans UA159 |
48.864 |
96.703 |
0.473 |
| comYC | Streptococcus mutans UA140 |
48.864 |
96.703 |
0.473 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
48.864 |
96.703 |
0.473 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
47.253 |
100 |
0.473 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
47.253 |
100 |
0.473 |
| comGC/cglC | Streptococcus pneumoniae D39 |
47.253 |
100 |
0.473 |
| comGC/cglC | Streptococcus pneumoniae R6 |
47.253 |
100 |
0.473 |
| comGC/cglC | Streptococcus mitis SK321 |
50.588 |
93.407 |
0.473 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
47.191 |
97.802 |
0.462 |
| comGC | Staphylococcus aureus MW2 |
44.872 |
85.714 |
0.385 |
| comGC | Staphylococcus aureus N315 |
44.872 |
85.714 |
0.385 |