Detailed information NTG0400857

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GGC04_RS13665
• Genome accession: NZ_CP046065
• Coordinates: 2961153..2964539 (+)
• Length: 1128 a.a.
• NCBI ID: WP_006958090.1
• Uniprot ID: A0AAJ4DUN7
• Organism: Vibrio sp. THAF191d
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2956153..2969539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGC04_RS13645 (GGC04_13790)	erpA	2956619..2956960 (-)	342	WP_019276906.1	iron-sulfur cluster insertion protein ErpA	-
GGC04_RS13650 (GGC04_13795)	hemL	2957216..2958508 (+)	1293	WP_006958083.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GGC04_RS13655 (GGC04_13800)	-	2958772..2959857 (+)	1086	WP_006958085.1	AI-2E family transporter	-
GGC04_RS13660 (GGC04_13805)	rsmC	2959936..2960958 (+)	1023	WP_039951301.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GGC04_RS13665 (GGC04_13810)	chiS	2961153..2964539 (+)	3387	WP_006958090.1	response regulator	Regulator
GGC04_RS13670 (GGC04_13815)	-	2965226..2966908 (+)	1683	WP_006958092.1	ABC transporter substrate-binding protein	-
GGC04_RS13675 (GGC04_13820)	-	2967079..2968065 (+)	987	WP_006958093.1	ABC transporter permease	-
GGC04_RS13680 (GGC04_13825)	-	2968068..2969093 (+)	1026	WP_006958094.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127189.06 Da
• Isoelectric Point: 6.1929

>NTDB_id=400857 GGC04_RS13665 WP_006958090.1 2961153..2964539(+) (chiS) [Vibrio sp. THAF191d]
MFKLYRKQRFKRLQHTLMLAFLVLSITPLTIIAIFFLQSHTKDLQEQSTSHLISVRDSKQQQVTDYMYAKESEVMGFVRS
ELAYASGGRFYGLVNAFRSLGLDMAQAREYAQRRYIPGSGDQIKTSILPQSNVYTGTERYRLLHKRYHRAYLELLKRSDF
DDALLVDLEGNVTYSIFKHDNYGTNLLTGRFRDTNLGRTFHKLKTQVTEKRKSNEDYTPVIISDFEMDRGKPVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADTNNASAMKTLLVGADHKSRTMAYEQKDIDKSREVVDLALEGKTDVGTYTNTLGEA
TIAAYSPISFKGVDWAIVVEVPEKEAFARVHQLETLFVFAMLCAIVLVVAASHYLSNFITAPLLKLTWAAEKVSAGDLDT
DIINTERKDEIGRLAISFERMQRSIRDKILLIKQQNEELESNLKLIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPITADHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDIETRAVDISGATRLVLELSTHLVGNKPIRI
INQVPNDPLWVCADPQRLEQVLYNLVGNAIKYTSEGKIVISATQVDDNIRVQVVDTGQGIPAEQLEHIFEPLIQAGSDSS
RYRQGAGLGLSISRQLIDLMQGTLYVSSQPMVGTTFSFTLPIASTEQIGLASHIEGAHFIAPENNDLEIIEGSNLPENPD
GPLLLVVDDEPVNLRVLDSFLRLEGYRVRTAKNGEEAVESVVHEKPELMLLDIMMPGMSGYQVCEVLRKDYDHAQLPVIM
LTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHLTASKAEQRRIENQQLQTELKQRAMVEASLLETQGRLLEQLE
SAPEAIICVRDDNKIRFTNDAASRLFKRTTEQLRRSNADELIAPKFLNVEQPHYCGVIDVYVEDVRQHLSADILKLPEGS
GLKSMYIFNVGGSVNAARINNLETAVEALSSYAFEGDKAKLQELKELGGEFTRLADRATTDNKSKQEVMREVLVDAMTSA
LTYWESVTGQSKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSLEYILEHCKEMSPERTHIESLRD
KLQHLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=400857 GGC04_RS13665 WP_006958090.1 2961153..2964539(+) (chiS) [Vibrio sp. THAF191d]
ATGTTTAAGTTGTACCGAAAACAAAGATTTAAGCGCCTGCAACATACTTTAATGCTGGCATTTCTTGTATTGAGTATTAC
ACCGCTCACGATCATCGCGATTTTTTTCCTCCAATCTCATACCAAAGATTTGCAGGAGCAAAGTACTTCGCACTTAATCT
CCGTACGAGACAGTAAGCAGCAACAAGTCACTGACTACATGTATGCCAAAGAATCGGAAGTCATGGGCTTTGTCCGCTCT
GAACTGGCTTATGCCAGTGGCGGGCGTTTCTACGGCTTGGTCAATGCATTTCGCAGCTTAGGACTGGATATGGCTCAGGC
ACGCGAGTACGCTCAGCGGCGTTACATTCCTGGCTCAGGCGATCAGATCAAAACCTCAATACTTCCTCAGTCCAATGTTT
ATACCGGCACTGAGCGCTATCGACTGCTGCATAAGCGCTATCACAGAGCCTATCTGGAACTGCTCAAACGCTCAGACTTT
GACGACGCTTTGCTGGTTGATTTAGAAGGTAACGTCACCTACTCCATCTTTAAACACGACAACTACGGCACCAATCTGCT
TACTGGCCGCTTTCGTGATACCAATCTAGGCAGAACCTTCCACAAGCTGAAAACTCAGGTTACTGAAAAGCGTAAATCCA
ATGAAGATTACACACCGGTGATCATCTCAGACTTTGAGATGGACAGAGGTAAACCTGTCGCGTGGCTCGGCGCTCCCATC
GTTCAGCAAGGTTATCTCCACAGCTACGCCATGTTCCGTTTACCAAACAATGGCATCACTAAGCTAATAGCTGATACCAA
CAACGCTTCAGCAATGAAAACTTTACTGGTAGGTGCTGACCATAAATCAAGAACCATGGCGTATGAGCAAAAAGACATCG
ATAAGAGCCGCGAAGTTGTTGATTTAGCATTGGAAGGAAAAACCGATGTTGGAACATACACAAACACGCTAGGAGAGGCG
ACCATCGCGGCTTACAGTCCGATTTCGTTTAAAGGTGTCGACTGGGCCATTGTGGTAGAAGTGCCAGAAAAAGAAGCTTT
TGCACGCGTCCACCAACTCGAAACTCTTTTCGTATTTGCCATGCTATGTGCAATTGTACTGGTGGTTGCAGCGTCCCATT
ACTTGTCTAATTTTATTACCGCGCCTTTGTTGAAGCTGACGTGGGCGGCAGAAAAAGTCTCGGCTGGCGATCTCGATACA
GACATCATCAATACAGAGCGAAAAGATGAGATAGGCCGACTGGCCATCAGCTTTGAGCGCATGCAACGCTCCATTCGCGA
CAAAATACTGCTCATAAAACAGCAAAATGAAGAGCTGGAGAGCAACCTAAAGCTGATCCAAAAGCAAAATGACGAGCTGC
AATTGGCGAACAAACTCAAAGATGAGTTCCTCGCCACCACCTCTCATGAATTGCGAACTCCACTCCATGGCATGGTAGGT
ATCGCAGAAGCGCTGATCTCCGGCGCTAATGGGCCAATTACCGCGGATCACAAGTACCAGCTCGACATCATCATTAGTAG
CGGCCAGCGCTTGGCCACATTGGTTGATGACCTGCTTGATTACCACAAAATGCGTTACGGTAATCTCGATATTGAAACCC
GAGCTGTGGATATCTCCGGAGCAACGCGCTTGGTGCTCGAACTGTCGACTCACTTAGTGGGCAACAAACCCATTCGCATC
ATTAATCAGGTTCCTAACGATCCGCTATGGGTATGCGCCGACCCTCAACGCTTAGAGCAAGTTCTATACAATCTCGTTGG
TAACGCCATCAAATACACCAGTGAAGGTAAAATCGTCATTTCCGCCACTCAGGTCGACGACAACATCCGCGTTCAAGTAG
TAGATACTGGTCAGGGGATCCCTGCTGAGCAACTTGAGCACATTTTTGAACCCCTGATTCAGGCTGGCAGTGATAGTAGC
CGTTATCGCCAAGGGGCCGGCCTTGGTCTATCTATCAGCCGTCAGTTGATTGATTTGATGCAAGGCACGCTCTACGTAAG
CAGCCAACCTATGGTTGGTACGACCTTTAGTTTCACTTTGCCAATCGCCTCAACCGAGCAAATAGGCCTCGCAAGCCATA
TCGAAGGCGCGCATTTCATTGCTCCAGAAAACAATGACCTAGAAATAATCGAAGGCTCAAATTTACCGGAAAATCCTGAC
GGGCCATTGCTGTTAGTGGTCGATGATGAACCGGTCAATCTGCGTGTCTTAGACAGCTTCCTTCGCCTCGAAGGCTACCG
AGTACGCACCGCTAAAAATGGCGAAGAAGCCGTTGAATCCGTTGTTCATGAAAAACCAGAACTGATGCTACTCGATATCA
TGATGCCGGGAATGAGCGGCTATCAGGTGTGTGAAGTGTTGCGTAAAGACTATGATCATGCTCAGCTCCCCGTCATCATG
CTCACAGCATTGAATCAGCCCGATGACAGAGTTCGAGGTTTCGAAGCCGGAGCCAATGACTACTTATCAAAACCTTTTAA
CAAACAAGAGCTCGCCGCACGGATTACAGCACATTTGACCGCGAGCAAAGCTGAACAGCGTCGGATTGAAAACCAGCAAC
TACAAACTGAGCTTAAGCAGCGCGCCATGGTTGAAGCTAGTTTACTGGAAACTCAGGGGCGTTTATTGGAACAATTGGAA
TCCGCACCAGAAGCGATTATCTGCGTACGTGACGACAATAAAATCCGCTTCACCAATGATGCTGCGTCTCGCCTATTTAA
ACGCACCACAGAACAATTACGCCGTTCCAATGCAGATGAGTTGATTGCACCAAAATTCCTTAACGTAGAGCAACCGCACT
ACTGTGGCGTCATTGATGTTTATGTCGAAGATGTCCGCCAGCACTTGTCCGCAGACATTCTCAAACTTCCAGAAGGCTCT
GGACTCAAATCCATGTACATCTTTAACGTGGGGGGCAGTGTCAATGCCGCGCGGATCAATAACCTAGAAACCGCGGTTGA
AGCCCTTTCCAGCTACGCGTTTGAAGGGGATAAGGCCAAACTGCAAGAGTTAAAAGAGTTAGGTGGAGAGTTTACGCGGT
TAGCTGATCGAGCCACCACTGATAACAAGTCCAAGCAAGAAGTCATGCGTGAAGTTTTAGTTGATGCAATGACAAGTGCG
CTAACTTATTGGGAAAGCGTTACTGGTCAAAGCAAGTTTGCTTTCGCAGAGCAAAGCGGGTTATGGCGTGTGTACCTCGA
CCGTAGCACCTTACAGACTCGGACTCTGGACAAATACCTGCGAGTCGAAACGTTACCAAAAACACCGCGCTGGCGAACGG
TACTGAGTTCTCTTGAGTACATCCTTGAACACTGTAAAGAGATGAGCCCTGAGCGTACTCATATTGAGAGCCTTCGCGAT
AAGCTGCAACACCTCCTAACCAGCTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	79.167	100	0.792