Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | GGC04_RS13830 | Genome accession | NZ_CP046065 |
| Coordinates | 3007564..3008169 (+) | Length | 201 a.a. |
| NCBI ID | WP_006958122.1 | Uniprot ID | A0A2A2CS00 |
| Organism | Vibrio sp. THAF191d | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3002564..3013169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GGC04_RS13810 (GGC04_13955) | - | 3002870..3003784 (-) | 915 | WP_006958118.1 | ABC transporter ATP-binding protein | - |
| GGC04_RS13815 (GGC04_13960) | - | 3003985..3005655 (-) | 1671 | WP_006958119.1 | SulP family inorganic anion transporter | - |
| GGC04_RS13820 (GGC04_13965) | can | 3006010..3006669 (+) | 660 | WP_006958120.1 | carbonate dehydratase | - |
| GGC04_RS13825 (GGC04_13970) | hpt | 3006727..3007257 (-) | 531 | WP_006958121.1 | hypoxanthine phosphoribosyltransferase | - |
| GGC04_RS13830 (GGC04_13975) | opaR | 3007564..3008169 (+) | 606 | WP_006958122.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| GGC04_RS13835 (GGC04_13980) | lpdA | 3008288..3009718 (-) | 1431 | WP_006958123.1 | dihydrolipoyl dehydrogenase | - |
| GGC04_RS13840 (GGC04_13985) | aceF | 3009974..3011875 (-) | 1902 | WP_006958124.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23243.41 Da Isoelectric Point: 5.2990
>NTDB_id=400858 GGC04_RS13830 WP_006958122.1 3007564..3008169(+) (opaR) [Vibrio sp. THAF191d]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDDHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDDHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK
Nucleotide
Download Length: 606 bp
>NTDB_id=400858 GGC04_RS13830 WP_006958122.1 3007564..3008169(+) (opaR) [Vibrio sp. THAF191d]
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAACAACAACTGATGGAAATCGCATTAGA
GGTGTTTGCTCGTCGTGGTATTGGTCGCGGTGGTCATGCTGACATTGCAGAAATCGCTCAGGTTTCTGTTGCTACTGTTT
TTAACTACTTCCCAACCCGCGAAGACTTGGTTGATGATGTACTTAACTACGTAGTTCGTCAGTTCTCAAACTTCCTATCA
GATAATATCGATCTTGATATTCATGCAAAAGAAAACCTACGCAACCTAACTTCGGCAATGGTTGACCTTGTTGTCAACGA
CTGCCACTGGCTTAAAGTTTGGTTCGAGTGGAGTGCATCGACACGTGATGAAGTATGGCCACTGTTTGTTACGACAAACC
GTACCAACCAGCTTCTGGTTCAGAACATGTTTATCAAAGCAATCGAGCGCGGTGAAGTATGTGATGATCACGACCCAGCA
GACCTAGCGACACTATTCCACGGCATCTGCTACTCACTGTTTGTGCAGGCTAACCGTACTCAAGATGATGAGTCTGTAAA
CCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAG
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAACAACAACTGATGGAAATCGCATTAGA
GGTGTTTGCTCGTCGTGGTATTGGTCGCGGTGGTCATGCTGACATTGCAGAAATCGCTCAGGTTTCTGTTGCTACTGTTT
TTAACTACTTCCCAACCCGCGAAGACTTGGTTGATGATGTACTTAACTACGTAGTTCGTCAGTTCTCAAACTTCCTATCA
GATAATATCGATCTTGATATTCATGCAAAAGAAAACCTACGCAACCTAACTTCGGCAATGGTTGACCTTGTTGTCAACGA
CTGCCACTGGCTTAAAGTTTGGTTCGAGTGGAGTGCATCGACACGTGATGAAGTATGGCCACTGTTTGTTACGACAAACC
GTACCAACCAGCTTCTGGTTCAGAACATGTTTATCAAAGCAATCGAGCGCGGTGAAGTATGTGATGATCACGACCCAGCA
GACCTAGCGACACTATTCCACGGCATCTGCTACTCACTGTTTGTGCAGGCTAACCGTACTCAAGATGATGAGTCTGTAAA
CCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
85 |
99.502 |
0.846 |
| hapR | Vibrio cholerae C6706 |
76.382 |
99.005 |
0.756 |
| hapR | Vibrio cholerae strain A1552 |
76.382 |
99.005 |
0.756 |