Detailed information NTG0400860

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GGC04_RS13900
• Genome accession: NZ_CP046065
• Coordinates: 3025419..3026288 (+)
• Length: 289 a.a.
• NCBI ID: WP_006958139.1
• Uniprot ID: A0A837G3P6
• Organism: Vibrio sp. THAF191d
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3020419..3031288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGC04_RS13880 (GGC04_14025)	nadC	3020942..3021829 (+)	888	WP_006958132.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GGC04_RS13885 (GGC04_14030)	-	3022057..3022497 (+)	441	WP_031343346.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GGC04_RS13890 (GGC04_14035)	pilB	3022500..3024146 (+)	1647	WP_006958137.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GGC04_RS13895 (GGC04_14040)	-	3024155..3025369 (+)	1215	WP_039951277.1	type II secretion system F family protein	-
GGC04_RS13900 (GGC04_14045)	pilD	3025419..3026288 (+)	870	WP_006958139.1	A24 family peptidase	Machinery gene
GGC04_RS13905 (GGC04_14050)	coaE	3026290..3026898 (+)	609	WP_006958140.1	dephospho-CoA kinase	-
GGC04_RS13910 (GGC04_14055)	zapD	3026932..3027672 (+)	741	WP_006958141.1	cell division protein ZapD	-
GGC04_RS13915 (GGC04_14060)	yacG	3027724..3027918 (+)	195	WP_006958142.1	DNA gyrase inhibitor YacG	-
GGC04_RS13920 (GGC04_14065)	rplS	3028186..3028539 (-)	354	WP_006958143.1	50S ribosomal protein L19	-
GGC04_RS13925 (GGC04_14070)	trmD	3028581..3029324 (-)	744	WP_006958144.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GGC04_RS13930 (GGC04_14075)	rimM	3029352..3029900 (-)	549	WP_006958145.1	ribosome maturation factor RimM	-
GGC04_RS13935 (GGC04_14080)	rpsP	3029930..3030178 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32477.41 Da
• Isoelectric Point: 6.6830

>NTDB_id=400860 GGC04_RS13900 WP_006958139.1 3025419..3026288(+) (pilD) [Vibrio sp. THAF191d]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECAESFPEYGIAPPHGTYNLSIPRSTCPSCKTQIRNL
DNIPVISWLLLRGKCRACQAKISPRYPLVELLSGAMSFAIAYQFELSAFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=400860 GGC04_RS13900 WP_006958139.1 3025419..3026288(+) (pilD) [Vibrio sp. THAF191d]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTACCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGCTGAAAGCTTCCCAGAATACGGTA
TCGCTCCTCCACACGGTACCTATAACCTCAGTATTCCTCGCTCCACCTGCCCAAGCTGTAAAACGCAAATCCGTAATCTC
GACAATATCCCAGTTATTAGCTGGCTACTTTTGCGTGGTAAATGTCGTGCCTGTCAGGCCAAAATTAGCCCTCGCTATCC
GTTGGTTGAGTTGCTGTCAGGTGCAATGAGCTTTGCTATTGCTTATCAGTTTGAACTGAGCGCTTTTGCCATCGCCCTGC
TATTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTAATTTGGTCAGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTTTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
GGGTTATTTATGTTTATGGTCTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTAGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCTTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

3D structure

• AlphaFold DB: A0A837G3P6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.125	100	0.761
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	51.661	93.772	0.484
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474