Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HUR94_RS14215 Genome accession   NZ_CP054665
Coordinates   2866120..2866635 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain IGC_EcoliInv_1.1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861120..2871635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR94_RS14190 ygaZ 2861519..2862256 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  HUR94_RS14195 ygaH 2862246..2862581 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HUR94_RS14200 emrR 2862672..2863202 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HUR94_RS14205 emrA 2863329..2864501 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HUR94_RS14210 emrB 2864518..2866056 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HUR94_RS14215 luxS 2866120..2866635 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HUR94_RS14220 gshA 2866785..2868341 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HUR94_RS14225 yqaA 2868414..2868842 (-) 429 WP_001287454.1 YqaA family protein -
  HUR94_RS14230 yqaB 2868839..2869405 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HUR94_RS14260 csrA 2870863..2871048 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=400649 HUR94_RS14215 WP_001130211.1 2866120..2866635(-) (luxS) [Escherichia coli strain IGC_EcoliInv_1.1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=400649 HUR94_RS14215 WP_001130211.1 2866120..2866635(-) (luxS) [Escherichia coli strain IGC_EcoliInv_1.1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment