Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GJD93_RS12970 Genome accession   NZ_CP046045
Coordinates   2464369..2465598 (+) Length   409 a.a.
NCBI ID   WP_154321113.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2459369..2470598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS12930 (GJD93_12920) rimP 2459681..2460205 (-) 525 WP_154321111.1 ribosome maturation factor RimP -
  GJD93_RS12955 (GJD93_12945) secG 2461214..2461543 (-) 330 WP_004975868.1 preprotein translocase subunit SecG -
  GJD93_RS12960 (GJD93_12950) tpiA 2461557..2462348 (-) 792 WP_004975867.1 triose-phosphate isomerase -
  GJD93_RS12965 (GJD93_12955) pilB 2462626..2464338 (+) 1713 WP_154321112.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJD93_RS12970 (GJD93_12960) pilC 2464369..2465598 (+) 1230 WP_154321113.1 type II secretion system F family protein Machinery gene
  GJD93_RS12975 (GJD93_12965) pilD 2465622..2466485 (+) 864 WP_154321114.1 prepilin peptidase Machinery gene
  GJD93_RS12980 (GJD93_12970) coaE 2466495..2467094 (+) 600 WP_154321115.1 dephospho-CoA kinase -
  GJD93_RS12985 (GJD93_12975) - 2467100..2467978 (-) 879 WP_218948405.1 DMT family transporter -
  GJD93_RS12990 (GJD93_12980) rlmB 2468073..2468822 (-) 750 WP_154321117.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GJD93_RS12995 (GJD93_12985) - 2469011..2469334 (-) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45085.63 Da        Isoelectric Point: 9.9487

>NTDB_id=400649 GJD93_RS12970 WP_154321113.1 2464369..2465598(+) (pilC) [Acinetobacter towneri strain 19110F47]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFILIIVIGVMIA
GFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=400649 GJD93_RS12970 WP_154321113.1 2464369..2465598(+) (pilC) [Acinetobacter towneri strain 19110F47]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAAGGGATTGACCGCAAAGGGGCTAAGTTAAAAGGGGA
AATTCCAGCGCGTAATATGGCCTTGGCAAAGGTCACATTGCGTAAACAAGGGATTACCATCAAGACGATTCGCCAAAAGA
AAAAGAATATTCTTGAAGGCTTAATGAAAAAACGGGTGTCGACATTAGACATCACTATTTTCACGCGTCAGCTTGCCACT
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAGATTGTTGCCGAAGGTCTTGAAAACCCCGCCATGCGTGAAGT
GGTTTTAGGCATTAAAGGTGAAGTGGAAGGCGGGAATACCTTTGCTGGCGCATTGCGTAAATATCCTCAATATTTTGACA
ATCTGTTCTGCTCTTTGGTTGAATCTGGTGAACAATCGGGTGCACTAGAAACCATGCTGGATCGTGTCGCGATCTATAAA
GAAAAGAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCTGCAACGGTCATCGTGGTGGCTGTGATTGT
GACCATTATTTTGATGGTAAAAGTTGTACCTGTATTTGAAGAGTTGTTTAGCTCTTTTGGTGCAGACTTGCCTGCCTTCA
CTAAAATGGTGGTCAACATGTCACAATGGATGCAGAAATACTGGTTTATTCTGATTATTGTGATTGGGGTCATGATTGCA
GGTTTCTTGGAAACTAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTGAAAGCGCCTATTTTTGG
TGACTTGGTCTATAAAGCCATTATCGCGCGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCTTTGGAATCGACCGCTGGGGCAACCAATAACGTGGTCTATGAAGAAGCGGTGATGAAAATCCGTGATGATGTCGCG
ACAGGACAGCAGCTACAATTCGCCATGCGTGTCACCAATAAATTCCCTTCTATGGCGGTGCAAATGGTCGCCATTGGTGA
AGAATCAGGTGCGCTAGATGCCATGCTGGATAAAGTCGCAACCCACTATGAAAACGAAGTCGACAACGCAGTAGATGGCT
TAACCTCAATGATGGAGCCGTTGATTATGTCTGTCTTGGGTATTTTAGTTGGCGGTTTAGTTATTGCTATGTACCTACCT
ATTTTCCAAATGGGTTCAGTTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.235

99.756

0.88
  pilC Acinetobacter baylyi ADP1

83.824

99.756

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.852

99.267

0.594
  pilC Legionella pneumophila strain ERS1305867

53.086

99.022

0.526
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

43.521

100

0.435
  pilC Vibrio campbellii strain DS40M4

42.222

99.022

0.418
  pilC Thermus thermophilus HB27

36.79

99.022

0.364

Multiple sequence alignment