Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GJD93_RS12975 Genome accession   NZ_CP046045
Coordinates   2465622..2466485 (+) Length   287 a.a.
NCBI ID   WP_154321114.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2460622..2471485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS12955 (GJD93_12945) secG 2461214..2461543 (-) 330 WP_004975868.1 preprotein translocase subunit SecG -
  GJD93_RS12960 (GJD93_12950) tpiA 2461557..2462348 (-) 792 WP_004975867.1 triose-phosphate isomerase -
  GJD93_RS12965 (GJD93_12955) pilB 2462626..2464338 (+) 1713 WP_154321112.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJD93_RS12970 (GJD93_12960) pilC 2464369..2465598 (+) 1230 WP_154321113.1 type II secretion system F family protein Machinery gene
  GJD93_RS12975 (GJD93_12965) pilD 2465622..2466485 (+) 864 WP_154321114.1 prepilin peptidase Machinery gene
  GJD93_RS12980 (GJD93_12970) coaE 2466495..2467094 (+) 600 WP_154321115.1 dephospho-CoA kinase -
  GJD93_RS12985 (GJD93_12975) - 2467100..2467978 (-) 879 WP_218948405.1 DMT family transporter -
  GJD93_RS12990 (GJD93_12980) rlmB 2468073..2468822 (-) 750 WP_154321117.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GJD93_RS12995 (GJD93_12985) - 2469011..2469334 (-) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32062.51 Da        Isoelectric Point: 8.2629

>NTDB_id=400650 GJD93_RS12975 WP_154321114.1 2465622..2466485(+) (pilD) [Acinetobacter towneri strain 19110F47]
MLTELIAYLIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIINESKITLSKPASTCPKCHN
PIRWYQNIPVLSWLVLRGKCGNCQNLISVRYPMIEVLTAVCALIVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPD
RYTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSS
LVGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 864 bp        

>NTDB_id=400650 GJD93_RS12975 WP_154321114.1 2465622..2466485(+) (pilD) [Acinetobacter towneri strain 19110F47]
TTGCTTACAGAATTAATCGCGTACTTGATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTAT
TGGCAGTTTTTTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAACAGGAGTGGCGTAACGACTGCCAAATGTTGT
TACATCCTGAACAAGCCATTATTAATGAAAGTAAAATCACCCTGAGCAAACCTGCATCGACCTGCCCCAAATGTCACAAC
CCAATTCGTTGGTATCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTGGCAACTGCCAAAACCTGAT
CAGCGTACGTTATCCAATGATTGAAGTATTAACCGCTGTTTGCGCCCTGATTGTGCTTGCGGTATTTGGCCCAACTGTAC
AAATGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGAC
CGTTACACCCTGCCTTTGGCTGCACTGGGTTTGGCCGTCAACAGCTATGCCATCTATACCTCACCAACCTCGGCAATTTG
GGGTTATGTAATTGGCTTCCTATGTCTATGGGTGGTGTATTACCTGTTTAAAATCGTCACAGGCAAAGAAGGCATGGGCT
ATGGTGACTTCAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCGATGATGTTACCCCTGATTGTGCTGCTATCGTCC
TTAGTTGGGGCGATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTTGCATTTGGTCCGTATATCGC
CATTGCGGGCTGGATTGCCTTTTTATGGGGCGAGCAAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.298

99.303

0.787
  pilD Acinetobacter baumannii D1279779

78.947

99.303

0.784
  pilD Vibrio cholerae strain A1552

54.851

93.38

0.512
  pilD Vibrio campbellii strain DS40M4

52.788

93.728

0.495
  pilD Neisseria gonorrhoeae MS11

46.154

95.122

0.439

Multiple sequence alignment