Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GJD93_RS02505 Genome accession   NZ_CP046045
Coordinates   303990..306140 (+) Length   716 a.a.
NCBI ID   WP_171501118.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298990..311140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS02485 (GJD93_02485) pilM 300948..302006 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  GJD93_RS02490 (GJD93_02490) pilN 302006..302641 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  GJD93_RS02495 (GJD93_02495) comO 302638..303408 (+) 771 WP_154320248.1 type 4a pilus biogenesis protein PilO Machinery gene
  GJD93_RS02500 (GJD93_02500) pilP 303405..303929 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  GJD93_RS02505 (GJD93_02505) pilQ 303990..306140 (+) 2151 WP_171501118.1 type IV pilus secretin PilQ Machinery gene
  GJD93_RS02510 (GJD93_02510) aroK 306178..306720 (+) 543 WP_004974468.1 shikimate kinase AroK -
  GJD93_RS02515 (GJD93_02515) aroB 306739..307818 (+) 1080 WP_154320250.1 3-dehydroquinate synthase -
  GJD93_RS02520 (GJD93_02520) - 307829..308674 (+) 846 WP_154320251.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 77818.03 Da        Isoelectric Point: 5.4984

>NTDB_id=400624 GJD93_RS02505 WP_171501118.1 303990..306140(+) (pilQ) [Acinetobacter towneri strain 19110F47]
MNNLFRQFSIGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPMAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPTHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITEGRNSKNSSNTSNSNNNANNTVD
PLGDSVGSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGIT
NNNHLLVGGSDTTLWDLRTPEYKQEAGVGTWKYEIERPQNLNVDLGVTAEGASRIAFGLISLSDFMLDLELSALQADGYG
EVISTPKVLTADKQKAKVASGQQIPYRSTGDNGQATTEFKDALLSLEVTPSITPDGRVQMNLDVNSDSPGQVTPDGNIAI
NKNFVNTNVLVDNGETVVLGGIFEQQTANAQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=400624 GJD93_RS02505 WP_171501118.1 303990..306140(+) (pilQ) [Acinetobacter towneri strain 19110F47]
ATGAACAATTTGTTCCGTCAGTTTTCAATAGGCGCAGTCGCAATGGCAGTGATGCAAGTTGCCAATGCCCAAGTCAGCAT
TACCAACATCGTACCCATGCAAATTCCGGGACAGGGCACCGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CTGCATATCAGCTGGAACAACCTTCCCGCCTGATTTTAGATTTTGACAAAGCGCAACAAACGCTGAAGCAAAACAGCGTT
GCAGTCGCGACCAAAGAAGCCAGCTCTGTAGAGGTAAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGTGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATTAACTCAACTACGGCAACGCCTATGGCTG
CCGTGACTGCTCAACGTAGCGCACAAGGCGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGCGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTGCGTACTTTAGGCAATAA
AGTACCAACACATTTGGCACGCCGTTTAAATGTAAATGATTTTGCAACACCTGTGTCGACCATTGATGCACATAATGATG
GCAGCAATGGCGTGATTACCATTCAGGCTGCGGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCGCGTGCAGCGCAAAGCTATACAGGCAAAAAGATTTCACTAGA
TTTCCAAGACATCGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTTACAGGCATTAACATGGTGGCAGCAGACACCG
TGCAAGGCAACATTACCTTACGCTTAAAAGATGTACCTTGGGATCAGGCGTTAGACATTATCCTGAAAACCAAAAACTTA
GATAAGCGTCGTAATGGCAACGTGATCTGGATTGCGCCTGTTTCTGAATTGATTAAAGCCGAAGAAGAAGAAGCCAAAGC
GATTGCACAAAGTGTCAAACTGGCGCCACTACAAACTGAATATATTCAATTGAACTATGCCAAAGCGGCAGATATTGAAA
AGTTGATTACTGAAGGGCGTAACTCGAAAAATAGTAGTAATACATCTAATAGTAACAATAATGCAAATAATACAGTAGAT
CCGCTTGGTGATAGTGTTGGTAGTTTGCTTAGCCCAAGAGGAACAGTATCGGTAGACCCACGGACCAATACCTTAATCAT
TAACGATACTTCAGCAAAAATTGATCAGATTCGTCAAATGATTGATTTGCTGGATGTGTCTGTGAAGCAAGTGATGATTG
AAGCGCGCATTGTTCGTGCAACCACAGATTTCACCAAGGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACC
AATAATAATCACTTGTTGGTGGGTGGAAGTGATACAACTCTTTGGGATTTGCGTACACCAGAATATAAGCAAGAAGCAGG
TGTAGGAACTTGGAAGTATGAAATTGAGCGTCCACAAAACTTGAATGTCGATTTAGGTGTAACTGCTGAAGGTGCGAGTC
GTATTGCATTTGGTTTGATTAGTTTGTCTGACTTTATGCTAGATTTGGAATTGTCTGCTCTGCAAGCAGATGGCTATGGT
GAAGTGATTTCAACACCAAAAGTTCTGACTGCAGATAAACAAAAGGCTAAAGTTGCATCAGGGCAACAAATTCCATATCG
ATCGACTGGTGATAATGGTCAGGCAACGACTGAATTTAAAGATGCATTATTGAGCTTAGAAGTAACCCCGAGTATTACTC
CTGATGGTAGAGTTCAGATGAATTTGGATGTAAATAGTGATTCACCTGGTCAAGTTACTCCAGATGGTAATATTGCGATT
AATAAAAACTTCGTGAACACTAATGTCTTGGTAGATAATGGTGAAACTGTGGTCTTGGGGGGGATTTTTGAGCAACAAAC
TGCCAATGCACAAACCAAGGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGG
ACAACAAACGTGAGTTGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-450)

Bacterial type II and III secretion system protein (Secretin)

(553-708)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.758

100

0.768
  pilQ Acinetobacter baumannii strain A118

75.62

100

0.767
  comQ Acinetobacter baylyi ADP1

74.48

100

0.75
  pilQ Pseudomonas aeruginosa PAK

40.678

98.883

0.402
  pilQ Legionella pneumophila strain ERS1305867

37.042

99.162

0.367
  pilQ Legionella pneumophila strain Lp02

37.042

99.162

0.367

Multiple sequence alignment