Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   GJD93_RS02495 Genome accession   NZ_CP046045
Coordinates   302638..303408 (+) Length   256 a.a.
NCBI ID   WP_154320248.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297638..308408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS02480 (GJD93_02480) ponA 298226..300778 (-) 2553 WP_154320247.1 penicillin-binding protein PBP1a -
  GJD93_RS02485 (GJD93_02485) pilM 300948..302006 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  GJD93_RS02490 (GJD93_02490) pilN 302006..302641 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  GJD93_RS02495 (GJD93_02495) comO 302638..303408 (+) 771 WP_154320248.1 type 4a pilus biogenesis protein PilO Machinery gene
  GJD93_RS02500 (GJD93_02500) pilP 303405..303929 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  GJD93_RS02505 (GJD93_02505) pilQ 303990..306140 (+) 2151 WP_171501118.1 type IV pilus secretin PilQ Machinery gene
  GJD93_RS02510 (GJD93_02510) aroK 306178..306720 (+) 543 WP_004974468.1 shikimate kinase AroK -
  GJD93_RS02515 (GJD93_02515) aroB 306739..307818 (+) 1080 WP_154320250.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28866.66 Da        Isoelectric Point: 5.4538

>NTDB_id=400622 GJD93_RS02495 WP_154320248.1 302638..303408(+) (comO) [Acinetobacter towneri strain 19110F47]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGGWPLSVKITCWIFIIFLIAALGYFVVIKPKLDAIAAAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADAQTTMESGATDTAANS
EKSNKRVNNTAKRGKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=400622 GJD93_RS02495 WP_154320248.1 302638..303408(+) (comO) [Acinetobacter towneri strain 19110F47]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAGCAGTTTAATACCCTTGATCCAAATAACTATGGTGGTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTCATTA
TTTTCTTAATTGCGGCACTAGGCTATTTTGTCGTAATTAAGCCGAAGTTAGATGCCATTGCTGCAGCGCATGCACAAGAA
CAGAATTTATTAAACGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAACAATATCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAGCAGCTTGAGCAATTGCCGAAAGAAACTGAAATTCCAGGCTTAGTTGAAGACATCAACGTAA
CAGGTGTTAATTCAGGCTTGAAGTTTAAAAACATTCGCTTAGAGAATGAAATTAAACAAGAGTTCTTTATTGAGCAGCCA
ATTTCGATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTGACCTATAAAGCACAAG
CAAAAACTTATCGTTATGTGGGCAGTGCAGATGCGCAAACTACAATGGAAAGCGGTGCAACCGATACTGCTGCGAATAGC
GAGAAGAGTAATAAAAGAGTAAATAATACTGCGAAAAGGGGTAAAAAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

70.954

94.141

0.668
  pilO Acinetobacter baumannii D1279779

70.833

93.75

0.664

Multiple sequence alignment