Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GJS33_RS09280 Genome accession   NZ_CP046041
Coordinates   1966417..1966812 (-) Length   131 a.a.
NCBI ID   WP_154299183.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961417..1971812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS09260 (GJS33_09260) - 1962208..1963011 (-) 804 WP_115267194.1 ABC transporter ATP-binding protein -
  GJS33_RS09265 (GJS33_09265) - 1963020..1963904 (-) 885 WP_154299181.1 ABC transporter permease -
  GJS33_RS09270 (GJS33_09270) - 1964011..1964973 (-) 963 WP_154299182.1 ABC transporter substrate-binding protein -
  GJS33_RS09275 (GJS33_09275) - 1964991..1965965 (-) 975 WP_043031576.1 ABC transporter substrate-binding protein -
  GJS33_RS09280 (GJS33_09280) ssbA 1966417..1966812 (-) 396 WP_154299183.1 single-stranded DNA-binding protein Machinery gene
  GJS33_RS09285 (GJS33_09285) - 1966953..1967636 (+) 684 WP_228269142.1 class I SAM-dependent methyltransferase -
  GJS33_RS09290 (GJS33_09290) ytpR 1967933..1968559 (-) 627 WP_111692831.1 YtpR family tRNA-binding protein -
  GJS33_RS09295 (GJS33_09295) - 1968574..1968891 (-) 318 WP_111692832.1 thioredoxin family protein -
  GJS33_RS09300 (GJS33_09300) - 1968888..1969172 (-) 285 WP_228274146.1 DUF4651 domain-containing protein -
  GJS33_RS09305 (GJS33_09305) pepA 1969579..1970646 (+) 1068 WP_111692834.1 glutamyl aminopeptidase -
  GJS33_RS09310 (GJS33_09310) proC 1970730..1971503 (+) 774 WP_154299184.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14740.87 Da        Isoelectric Point: 8.9315

>NTDB_id=400552 GJS33_RS09280 WP_154299183.1 1966417..1966812(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFATEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=400552 GJS33_RS09280 WP_154299183.1 1966417..1966812(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACGGATAAGCAGGTTGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGTAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGCGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

43.59

89.313

0.389

Multiple sequence alignment