Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   POR16_RS20205 Genome accession   NZ_CP046035
Coordinates   4502084..4503301 (+) Length   405 a.a.
NCBI ID   WP_005895653.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4497084..4508301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS20180 (POR16_20180) - 4497632..4498177 (+) 546 WP_005895663.1 DUF1523 family protein -
  POR16_RS20185 (POR16_20185) - 4498221..4498628 (-) 408 WP_005895661.1 hypothetical protein -
  POR16_RS20190 (POR16_20190) - 4498625..4499299 (-) 675 WP_122358061.1 MerR family transcriptional regulator -
  POR16_RS20195 (POR16_20195) - 4499756..4500160 (-) 405 WP_005895657.1 pilin -
  POR16_RS20200 (POR16_20200) pilB 4500387..4502081 (+) 1695 WP_005895655.1 type IV-A pilus assembly ATPase PilB Machinery gene
  POR16_RS20205 (POR16_20205) pilC 4502084..4503301 (+) 1218 WP_005895653.1 type II secretion system F family protein Machinery gene
  POR16_RS20210 (POR16_20210) pilD 4503303..4504175 (+) 873 WP_005895651.1 prepilin peptidase Machinery gene
  POR16_RS20215 (POR16_20215) coaE 4504172..4504795 (+) 624 WP_005895649.1 dephospho-CoA kinase -
  POR16_RS20220 (POR16_20220) yacG 4504792..4505001 (+) 210 WP_005895648.1 DNA gyrase inhibitor YacG -
  POR16_RS20225 (POR16_20225) - 4505145..4505774 (+) 630 WP_005895647.1 DUF1780 domain-containing protein -
  POR16_RS20230 (POR16_20230) - 4505771..4506304 (+) 534 WP_005895644.1 MOSC domain-containing protein -
  POR16_RS20235 (POR16_20235) - 4506522..4507820 (+) 1299 WP_005895640.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44300.34 Da        Isoelectric Point: 10.2802

>NTDB_id=400392 POR16_RS20205 WP_005895653.1 4502084..4503301(+) (pilC) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MASKAAKVIVFIWEGVDKKGTKTSGELSGHNLALVKAQLRKQGITPTKVRKKSASIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRVLVNSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVARYKEKT
EKLKAKIKKAMTYPIAVLIVAMIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFLFK
RAYKQSQKFRDTLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=400392 POR16_RS20205 WP_005895653.1 4502084..4503301(+) (pilC) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGGCCAGCAAGGCAGCCAAAGTCATCGTTTTCATTTGGGAAGGGGTTGACAAGAAAGGCACTAAAACCAGTGGAGAGCT
GAGCGGCCATAATCTGGCACTCGTAAAAGCCCAACTGCGTAAGCAAGGGATCACCCCTACAAAGGTGCGCAAGAAATCGG
CGTCCATTTTTGGTAAGGGCAAGAAAATCAAGCCTCTGGACATCGCGTTCTTTTCTCGGCAGATGGCGACAATGATGAAG
GCAGGCGTGCCACTGCTTCAGTCATTCGATATTATCAGCGAGGGTGCAGAGAATCCGAATATGCGAGTGCTGGTAAATTC
GCTCAAACAGGAAGTTTCAGCGGGTAATAGTTTTGCAACCGCCTTGCGACAAAAGCCCGAGTATTTCGACGATCTTTTTT
GCAACCTGGTAGACGCCGGCGAGCAAGCTGGCGCACTTGAAAGCCTGCTGGACCGGGTTGCGAGATACAAAGAAAAGACC
GAAAAGCTAAAAGCTAAAATCAAAAAAGCCATGACATACCCGATTGCCGTGTTGATCGTCGCAATGATTGTGTCCGGCAT
TTTGCTGATCAAAGTGGTGCCGCAGTTCCAGTCAGTCTTCGCTAGCTTCGGCGCCCAATTGCCCACTTTCACACTGATGG
TAATCGGCCTGTCCGACGTCGTACAAAAATGGTGGCTGGCAATCGTTGGTCTATTTTTCGTCAGCTTTTTTTTGTTCAAA
CGAGCTTATAAGCAGTCTCAAAAATTCCGAGACACCCTCGACCGCTTCTTACTGAAAGTACCTATCATTGGCCCGTTGAT
TTTCAAGTCGTCGGTTGCTCGTTATGCCCGTACGCTTGCTACTACATTCGCTGCTGGCGTTCCGCTTGTAGAGGCTTTGG
ACTCAGTTGCTGGAGCCACGGGCAACGTAGTGTTCAAAAACGCAGTCAATAAGGTAAAGCAAGATGTCTCAACTGGTATG
CAACTGAATTTCTCGATGCGCTCAACAGGAGTATTTCCAAGCCTTGCGATTCAGATGACTGCCATTGGCGAGGAATCCGG
AGCTCTGGACACCATGCTCGACAAAGTTGCTACCTACTATGAGGATGAAGTCGACAACATGGTCGACAATCTGACCAGCC
TCATGGAACCGATGATCATGGCCTTTTTGGGAGTAATCGTCGGCGGGCTGGTCATTGCGATGTATCTACCTATCTTCCAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

59.804

100

0.602
  pilC Legionella pneumophila strain ERS1305867

51.232

100

0.514
  pilG Neisseria gonorrhoeae MS11

43.719

98.272

0.43
  pilG Neisseria meningitidis 44/76-A

43.467

98.272

0.427
  pilC Vibrio campbellii strain DS40M4

42.26

100

0.425
  pilC Vibrio cholerae strain A1552

41.919

97.778

0.41
  pilC Thermus thermophilus HB27

37.656

99.012

0.373

Multiple sequence alignment