Detailed information NTG0400393

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: POR16_RS20210
• Genome accession: NZ_CP046035
• Coordinates: 4503303..4504175 (+)
• Length: 290 a.a.
• NCBI ID: WP_005895651.1
• Uniprot ID: -
• Organism: Pseudomonas coronafaciens pv. oryzae str. 1_6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4498303..4509175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
POR16_RS20190 (POR16_20190)	-	4498625..4499299 (-)	675	WP_122358061.1	MerR family transcriptional regulator	-
POR16_RS20195 (POR16_20195)	-	4499756..4500160 (-)	405	WP_005895657.1	pilin	-
POR16_RS20200 (POR16_20200)	pilB	4500387..4502081 (+)	1695	WP_005895655.1	type IV-A pilus assembly ATPase PilB	Machinery gene
POR16_RS20205 (POR16_20205)	pilC	4502084..4503301 (+)	1218	WP_005895653.1	type II secretion system F family protein	Machinery gene
POR16_RS20210 (POR16_20210)	pilD	4503303..4504175 (+)	873	WP_005895651.1	prepilin peptidase	Machinery gene
POR16_RS20215 (POR16_20215)	coaE	4504172..4504795 (+)	624	WP_005895649.1	dephospho-CoA kinase	-
POR16_RS20220 (POR16_20220)	yacG	4504792..4505001 (+)	210	WP_005895648.1	DNA gyrase inhibitor YacG	-
POR16_RS20225 (POR16_20225)	-	4505145..4505774 (+)	630	WP_005895647.1	DUF1780 domain-containing protein	-
POR16_RS20230 (POR16_20230)	-	4505771..4506304 (+)	534	WP_005895644.1	MOSC domain-containing protein	-
POR16_RS20235 (POR16_20235)	-	4506522..4507820 (+)	1299	WP_005895640.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32086.29 Da
• Isoelectric Point: 8.5797

>NTDB_id=400393 POR16_RS20210 WP_005895651.1 4503303..4504175(+) (pilD) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPILSYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFTGFR

Nucleotide

• Length: 873 bp

>NTDB_id=400393 POR16_RS20210 WP_005895651.1 4503303..4504175(+) (pilD) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCTTGGCCTTCGTCACCACCTGCTGCATTCTCGGCTTGATCATAGGAAG
CTTCCTGAACGTAGTCGTCTACCGCCTCCCAAAAATGATGGAGCGCGACTGGAAAGCACAATCCCGTGAAATGCTCGGTT
TGCCCGCAGAGCCCGACCAGCCCGTTTTCAACCTGAACCGACCCCGTTCCAGCTGCCCGCACTGCGCGCACAAGATACGC
CCGTGGGAAAACCTGCCGATCCTCAGCTACCTGTTGCTGCGTGGCAAATGCTCGCAATGCAAAGCGCCGATCAGCAAACG
CTACCCGTTGGTCGAGCTGACCTGCGCAGTTTTGTCGGCCTATGTCGCCTGGCATTTTGGCTTTGGCTGGCAGGCTGCAG
CCATGTTGGTGTTGAGCTGGGGATTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTGCCTGATTCTCTGGTG
CTGCCATTGTTGTGGTTGGGCCTGATTGTTAACGCCTTTGGGCTGTTCACATCGCTAAATGATGCGCTCTGGGGTGCTGT
GGCGGGATATCTGGCGCTGTGGTCGGTGTTTTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGATT
TCAAACTGCTGGCCATGCTTGGCGCGTGGGGCGGTTGGCAGATTCTGCCGTTGACCATCCTGTTGTCGTCACTGGTGGGT
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTTGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTACCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.064	97.586	0.528
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	51.866	92.414	0.479