Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GFV05_RS07620 | Genome accession | NZ_CP045648 |
| Coordinates | 1504915..1505232 (+) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain IRL01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1499915..1510232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFV05_RS07590 (GFV05_07600) | - | 1500692..1500892 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| GFV05_RS07595 (GFV05_07605) | - | 1500892..1501878 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| GFV05_RS07600 (GFV05_07610) | - | 1501878..1502204 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| GFV05_RS07605 (GFV05_07615) | - | 1502204..1502827 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| GFV05_RS07610 (GFV05_07620) | comGA | 1502884..1503858 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GFV05_RS07615 (GFV05_07625) | comGB | 1503830..1504897 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GFV05_RS07620 (GFV05_07630) | comGC | 1504915..1505232 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GFV05_RS07625 (GFV05_07635) | comGD | 1505222..1505659 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| GFV05_RS07630 (GFV05_07640) | - | 1505646..1505939 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| GFV05_RS07635 (GFV05_07645) | - | 1505863..1506354 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| GFV05_RS07640 (GFV05_07655) | - | 1506519..1507031 (+) | 513 | WP_002440040.1 | shikimate kinase | - |
| GFV05_RS07645 (GFV05_07660) | gcvT | 1507249..1508340 (+) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GFV05_RS07650 (GFV05_07665) | gcvPA | 1508360..1509706 (+) | 1347 | WP_002456181.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=395878 GFV05_RS07620 WP_001831271.1 1504915..1505232(+) (comGC) [Staphylococcus epidermidis strain IRL01]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=395878 GFV05_RS07620 WP_001831271.1 1504915..1505232(+) (comGC) [Staphylococcus epidermidis strain IRL01]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |