Detailed information NTG0395457

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: GFB63_RS03310
• Genome accession: NZ_CP045596
• Coordinates: 657993..658385 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus strain TK-P3A
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 652993..663385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFB63_RS03275 (GFB63_03360)	dapD	653292..653990 (-)	699	WP_193838379.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
GFB63_RS11050 (GFB63_03365)	-	654076..654830 (-)	755	Protein_661	HAD family hydrolase	-
GFB63_RS03285 (GFB63_03370)	-	654945..655778 (-)	834	WP_011681672.1	putative RNA methyltransferase	-
GFB63_RS03295 (GFB63_03380)	-	656147..656314 (+)	168	WP_014621998.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
GFB63_RS03300 (GFB63_03385)	-	656367..656630 (+)	264	WP_011681674.1	hypothetical protein	-
GFB63_RS03305 (GFB63_03390)	tadA	656711..657229 (-)	519	WP_011681675.1	tRNA adenosine(34) deaminase TadA	-
GFB63_RS03310 (GFB63_03400)	ssbA	657993..658385 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
GFB63_RS03315 (GFB63_03405)	-	658590..658817 (-)	228	WP_064355726.1	sulfurtransferase TusA family protein	-
GFB63_RS03320 (GFB63_03410)	-	658832..659863 (-)	1032	WP_071417489.1	YeeE/YedE family protein	-
GFB63_RS03325 (GFB63_03415)	ytpR	660001..660624 (-)	624	WP_082309147.1	YtpR family tRNA-binding protein	-
GFB63_RS03330 (GFB63_03420)	-	660634..660948 (-)	315	WP_002945230.1	thioredoxin family protein	-
GFB63_RS03335 (GFB63_03425)	-	660945..661229 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
GFB63_RS03340 (GFB63_03430)	pepA	661329..662396 (+)	1068	WP_100273188.1	glutamyl aminopeptidase	-
GFB63_RS03345 (GFB63_03435)	proC	662412..663182 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=395457 GFB63_RS03310 WP_011227579.1 657993..658385(-) (ssbA) [Streptococcus thermophilus strain TK-P3A]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=395457 GFB63_RS03310 WP_011227579.1 657993..658385(-) (ssbA) [Streptococcus thermophilus strain TK-P3A]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACCCATTACGTTACTGAGGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385