Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GD578_RS01600 Genome accession   NZ_CP045560
Coordinates   336150..337376 (-) Length   408 a.a.
NCBI ID   WP_002156990.1    Uniprot ID   A0AB37CRG6
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331150..342376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS01570 (GD578_01585) - 331181..332491 (+) 1311 WP_153518201.1 tetratricopeptide repeat protein -
  GD578_RS01575 (GD578_01590) - 332568..332894 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  GD578_RS01580 (GD578_01595) rlmB 332996..333745 (+) 750 WP_002156969.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GD578_RS01585 (GD578_01600) - 333781..334695 (+) 915 WP_002156915.1 DMT family transporter -
  GD578_RS01590 (GD578_01605) coaE 334692..335288 (-) 597 WP_002156916.1 dephospho-CoA kinase -
  GD578_RS20355 (GD578_01610) pilD 335290..336150 (-) 861 WP_002157022.1 A24 family peptidase Machinery gene
  GD578_RS01600 (GD578_01615) pilC 336150..337376 (-) 1227 WP_002156990.1 type II secretion system F family protein Machinery gene
  GD578_RS01605 (GD578_01620) pilB 337404..339116 (-) 1713 WP_002156910.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GD578_RS01610 (GD578_01625) tpiA 339407..340201 (+) 795 WP_002156912.1 triose-phosphate isomerase -
  GD578_RS01615 (GD578_01630) secG 340214..340543 (+) 330 WP_002156913.1 preprotein translocase subunit SecG -
  GD578_RS01635 (GD578_01650) rimP 341180..341704 (+) 525 WP_002157009.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45045.55 Da        Isoelectric Point: 9.8883

>NTDB_id=395125 GD578_RS01600 WP_002156990.1 336150..337376(-) (pilC) [Acinetobacter nosocomialis strain AC1530]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=395125 GD578_RS01600 WP_002156990.1 336150..337376(-) (pilC) [Acinetobacter nosocomialis strain AC1530]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACCCGACAACTTGCGACT
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGGGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAGTCAGGTGCACTCGAAACAATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATTAAGAAAGCAATGAAATACCCTGCAACCGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATCTGTTTTCTTCTTTCGGTGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAGCTGGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCACTAGAGTCGACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACCGGTCAACAACTTCAATTTGCTATGCGAGTATCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.867

97.794

0.458
  pilG Neisseria meningitidis 44/76-A

46.867

97.794

0.458
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment