Detailed information NTG0395155

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GD578_RS20355
• Genome accession: NZ_CP045560
• Coordinates: 335290..336150 (-)
• Length: 286 a.a.
• NCBI ID: WP_002157022.1
• Uniprot ID: A0AB37CPX7
• Organism: Acinetobacter nosocomialis strain AC1530
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 330290..341150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GD578_RS01570 (GD578_01585)	-	331181..332491 (+)	1311	WP_153518201.1	tetratricopeptide repeat protein	-
GD578_RS01575 (GD578_01590)	-	332568..332894 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
GD578_RS01580 (GD578_01595)	rlmB	332996..333745 (+)	750	WP_002156969.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GD578_RS01585 (GD578_01600)	-	333781..334695 (+)	915	WP_002156915.1	DMT family transporter	-
GD578_RS01590 (GD578_01605)	coaE	334692..335288 (-)	597	WP_002156916.1	dephospho-CoA kinase	-
GD578_RS20355 (GD578_01610)	pilD	335290..336150 (-)	861	WP_002157022.1	A24 family peptidase	Machinery gene
GD578_RS01600 (GD578_01615)	pilC	336150..337376 (-)	1227	WP_002156990.1	type II secretion system F family protein	Machinery gene
GD578_RS01605 (GD578_01620)	pilB	337404..339116 (-)	1713	WP_002156910.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GD578_RS01610 (GD578_01625)	tpiA	339407..340201 (+)	795	WP_002156912.1	triose-phosphate isomerase	-
GD578_RS01615 (GD578_01630)	secG	340214..340543 (+)	330	WP_002156913.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32073.50 Da
• Isoelectric Point: 7.1784

>NTDB_id=395155 GD578_RS20355 WP_002157022.1 335290..336150(-) (pilD) [Acinetobacter nosocomialis strain AC1530]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACHQP
IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVLGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=395155 GD578_RS20355 WP_002157022.1 335290..336150(-) (pilD) [Acinetobacter nosocomialis strain AC1530]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCC
ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
CATTCGCTATCCAGCCATCGAACTACTTACCATGCTATGTTCATTGGTGGTGGTTATGGTGCTTGGGCCAACTATACAAA
TGCTTTTTGGACTGGTCCTCACATGGGTATTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG
TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCATTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	99.65	100	0.997
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441