Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GE021_RS10570 Genome accession   NZ_CP053792
Coordinates   2168705..2169979 (-) Length   424 a.a.
NCBI ID   WP_164407107.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2163705..2174979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS10540 (GE021_010530) - 2164028..2165194 (+) 1167 WP_164407102.1 site-specific integrase -
  GE021_RS11485 - 2165354..2165479 (-) 126 WP_257865518.1 hypothetical protein -
  GE021_RS10545 (GE021_010535) - 2165557..2165862 (-) 306 WP_003045716.1 DUF1292 domain-containing protein -
  GE021_RS10550 (GE021_010540) ruvX 2165873..2166292 (-) 420 WP_125073917.1 Holliday junction resolvase RuvX -
  GE021_RS10555 (GE021_010545) - 2166289..2166558 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  GE021_RS10560 (GE021_010550) spx 2166670..2167068 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  GE021_RS10565 (GE021_010555) recA 2167466..2168602 (-) 1137 WP_093999149.1 recombinase RecA -
  GE021_RS10570 (GE021_010560) cinA 2168705..2169979 (-) 1275 WP_164407107.1 competence/damage-inducible protein A Machinery gene
  GE021_RS10575 (GE021_010565) - 2170096..2170449 (-) 354 WP_125073915.1 VOC family protein -
  GE021_RS10580 (GE021_010570) - 2170452..2171024 (-) 573 WP_125073914.1 DNA-3-methyladenine glycosylase I -
  GE021_RS10585 (GE021_010575) ruvA 2171034..2171630 (-) 597 WP_125073913.1 Holliday junction branch migration protein RuvA Machinery gene
  GE021_RS10590 (GE021_010580) - 2171614..2172852 (-) 1239 WP_125073912.1 MFS transporter -
  GE021_RS10595 (GE021_010585) hexB 2172863..2174845 (-) 1983 WP_125073911.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46195.87 Da        Isoelectric Point: 5.3395

>NTDB_id=394665 GE021_RS10570 WP_164407107.1 2168705..2169979(-) (cinA) [Streptococcus canis strain HL_77_1]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIAIASQRSDLVILCGGLGPTEDDLTKQT
LAKFLKKDLVFDTQASQKLDDFFASRKQSSRTPNNERQAQLIAGSRPLQNKTGLAVGGLITVDDVTYVVLPGPPSELKPM
VNQELVPFLAHQSSKLYSKVLRFFGIGESQLVTILSDFIENQTDPTIAPYAKTGEVTLRLSTKAKDQTIADKKLAQLEAQ
LLSRKTPDNQPLSDFLYGYGEDNSLARETFELLIKNDKTITASESLTAGLFQSTLANFSGASQVFNGGFVTYSMEEKAKM
LDIPLDDLKSYGVVSAYTAEKMAEQARLLTGADIGVSLTGVAGPDMLENQPVGTVFIGLATQNKVESMKVLIGGRSRSDV
RHIATLHAFNMVRKTLLKPKNLLY

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=394665 GE021_RS10570 WP_164407107.1 2168705..2169979(-) (cinA) [Streptococcus canis strain HL_77_1]
ATGAAAGCTGAACTGATTGCAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCCCAATTTTTGTCGGA
AAAAATGGCAGAGCTAGGCATTGATGTCTATTTCCAGACAGCCGTTGGTGATAATGAAGAGCGTCTACTTTCTGTGATTG
CTATTGCTAGTCAACGGAGTGATTTAGTCATTTTATGCGGTGGTCTTGGACCTACCGAAGATGATTTAACCAAGCAAACC
CTAGCAAAATTTTTGAAGAAAGATTTGGTTTTTGATACTCAAGCGAGTCAAAAACTAGATGATTTTTTTGCCAGTCGTAA
GCAGTCATCTCGAACACCAAATAATGAGAGGCAGGCACAACTAATTGCTGGATCAAGACCTTTACAAAATAAGACAGGGC
TGGCAGTTGGTGGTTTGATTACGGTTGATGATGTGACTTACGTTGTTTTACCGGGGCCTCCTAGTGAACTAAAGCCTATG
GTTAATCAGGAATTAGTACCTTTTCTGGCGCATCAGTCTAGCAAACTTTATTCGAAGGTTCTACGCTTTTTTGGGATTGG
CGAGAGTCAATTAGTAACGATTTTATCAGATTTTATTGAAAATCAGACTGACCCCACTATTGCTCCTTATGCTAAGACTG
GGGAGGTCACTCTTCGCTTATCAACAAAAGCTAAGGACCAGACTATAGCAGATAAGAAACTAGCCCAGTTAGAAGCTCAG
CTATTATCCCGAAAAACTCCTGACAATCAGCCTTTATCAGATTTTCTTTATGGCTATGGGGAGGATAATTCCTTGGCGCG
TGAGACATTTGAGCTCTTAATAAAAAATGATAAGACAATTACAGCATCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAATTTTTCAGGAGCTTCCCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCAAAAATG
CTAGATATTCCTTTAGATGATTTGAAATCATATGGAGTTGTTAGTGCTTATACGGCCGAGAAGATGGCGGAACAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTGAGTTTAACAGGTGTTGCTGGGCCAGATATGTTGGAGAACCAGCCTGTAGGTA
CAGTTTTCATTGGCCTTGCCACTCAAAATAAGGTAGAATCAATGAAGGTTTTAATTGGGGGACGGAGTCGTTCAGATGTG
CGTCATATTGCGACTTTACATGCTTTTAATATGGTCCGTAAAACTTTATTAAAACCCAAAAATTTGCTATACTAG

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(263-416)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

72.104

99.764

0.719
  cinA Streptococcus mitis SK321

71.942

98.349

0.708
  cinA Streptococcus mitis NCTC 12261

71.463

98.349

0.703
  cinA Streptococcus pneumoniae TIGR4

70.743

98.349

0.696
  cinA Streptococcus pneumoniae R36A

70.743

98.349

0.696
  cinA Streptococcus pneumoniae Rx1

70.743

98.349

0.696
  cinA Streptococcus pneumoniae R6

70.743

98.349

0.696
  cinA Streptococcus pneumoniae D39

70.504

98.349

0.693
  cinA Streptococcus suis isolate S10

53.125

98.113

0.521
  cinA Bacillus subtilis subsp. subtilis str. 168

45.694

98.585

0.45