Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GE021_RS10585 Genome accession   NZ_CP053792
Coordinates   2171034..2171630 (-) Length   198 a.a.
NCBI ID   WP_125073913.1    Uniprot ID   A0A3P5Y0S8
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2166034..2176630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS10555 (GE021_010545) - 2166289..2166558 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  GE021_RS10560 (GE021_010550) spx 2166670..2167068 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  GE021_RS10565 (GE021_010555) recA 2167466..2168602 (-) 1137 WP_093999149.1 recombinase RecA -
  GE021_RS10570 (GE021_010560) cinA 2168705..2169979 (-) 1275 WP_164407107.1 competence/damage-inducible protein A Machinery gene
  GE021_RS10575 (GE021_010565) - 2170096..2170449 (-) 354 WP_125073915.1 VOC family protein -
  GE021_RS10580 (GE021_010570) - 2170452..2171024 (-) 573 WP_125073914.1 DNA-3-methyladenine glycosylase I -
  GE021_RS10585 (GE021_010575) ruvA 2171034..2171630 (-) 597 WP_125073913.1 Holliday junction branch migration protein RuvA Machinery gene
  GE021_RS10590 (GE021_010580) - 2171614..2172852 (-) 1239 WP_125073912.1 MFS transporter -
  GE021_RS10595 (GE021_010585) hexB 2172863..2174845 (-) 1983 WP_125073911.1 DNA mismatch repair endonuclease MutL Machinery gene
  GE021_RS10600 (GE021_010590) - 2174940..2176091 (-) 1152 WP_172774155.1 site-specific integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21833.09 Da        Isoelectric Point: 6.1051

>NTDB_id=394666 GE021_RS10585 WP_125073913.1 2171034..2171630(-) (ruvA) [Streptococcus canis strain HL_77_1]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQSVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGQTKVNNHTAGNPQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=394666 GE021_RS10585 WP_125073913.1 2171034..2171630(-) (ruvA) [Streptococcus canis strain HL_77_1]
ATGTACGATTATATTAAAGGTCAGTTGACCAAAATTACGGCAAAATATATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATTAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATCGGTAACCATTTATCTGCATCAAGTTATTCGTG
AGGATGCTCACTTGTTGTTTGGCTTTCACACAGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTCTCAGGTATT
GGTCCAACAACAGCCTTAGCTATCGTTGCGGTTGATGATAATCAAGGACTTGTTAATGCCATTGATAACAGTGACATTAA
ATACTTGATGAAATTTCCTAAGATTGGTAAAAAAACAGCTCAGCAAATGGTGCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCAGACCAAAGTGAACAACCATACAGCAGGTAACCCTCAACTAGACGAAGCGATCGAAGCTCTC
CTTGCCCTCGGTTATAAGGCAACAGAATTGAAGAAAATTCGTGCTTTCTTTGAAGGAACTTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y0S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414

Multiple sequence alignment