Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GE022_RS03520 Genome accession   NZ_CP053790
Coordinates   705344..705670 (+) Length   108 a.a.
NCBI ID   WP_111681571.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 700344..710670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS03480 (GE022_003465) - 700521..700865 (+) 345 WP_164405705.1 hypothetical protein -
  GE022_RS03485 (GE022_003470) - 701054..701809 (-) 756 WP_138125024.1 hypothetical protein -
  GE022_RS03490 (GE022_003475) - 702265..702528 (+) 264 WP_138125026.1 DUF3850 domain-containing protein -
  GE022_RS03495 (GE022_003480) - 702797..703075 (+) 279 WP_159322922.1 hypothetical protein -
  GE022_RS03500 (GE022_003485) - 703065..703739 (+) 675 WP_159322923.1 DUF2786 domain-containing protein -
  GE022_RS03505 (GE022_003490) - 703960..704958 (+) 999 WP_164405703.1 replication initiator protein A -
  GE022_RS03510 (GE022_003495) - 704977..705132 (+) 156 WP_164405702.1 hypothetical protein -
  GE022_RS03515 (GE022_003500) - 705129..705347 (+) 219 WP_037582094.1 helix-turn-helix transcriptional regulator -
  GE022_RS03520 (GE022_003505) ssbB 705344..705670 (+) 327 WP_111681571.1 single-stranded DNA-binding protein Machinery gene
  GE022_RS03525 (GE022_003510) - 705696..707981 (+) 2286 WP_164405701.1 C39 family peptidase -
  GE022_RS03530 (GE022_003515) - 708349..708654 (+) 306 WP_115276432.1 hypothetical protein -
  GE022_RS03535 (GE022_003520) - 708660..709358 (+) 699 WP_164405700.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12298.00 Da        Isoelectric Point: 10.0371

>NTDB_id=394504 GE022_RS03520 WP_111681571.1 705344..705670(+) (ssbB) [Streptococcus canis strain HL_77_2]
MNNTNLIGRLTKKAELYQTPDKKTYARFTIAINRKKKAGGSGSEADFIPCIIWGKAAENLVNWTDKGTLISLEGELRTRN
YEKDGQRHFVMEVWSTFFQVLSKPANDN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=394504 GE022_RS03520 WP_111681571.1 705344..705670(+) (ssbB) [Streptococcus canis strain HL_77_2]
ATGAATAATACAAACTTAATTGGTCGTCTGACTAAAAAGGCTGAGCTATATCAAACGCCAGATAAGAAGACCTATGCCCG
ATTTACAATAGCGATTAATCGGAAAAAGAAAGCAGGCGGGTCAGGAAGTGAGGCCGATTTCATTCCTTGCATTATCTGGG
GAAAAGCTGCTGAAAACTTAGTGAACTGGACGGATAAGGGAACACTCATCAGTCTAGAGGGAGAACTGCGAACTCGCAAC
TATGAAAAAGATGGTCAACGTCATTTTGTCATGGAGGTGTGGTCAACCTTTTTCCAAGTCTTATCAAAGCCAGCTAATGA
CAACTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

48.113

98.148

0.472
  ssbB/cilA Streptococcus mitis NCTC 12261

49.038

96.296

0.472
  ssbB/cilA Streptococcus mitis SK321

49.038

96.296

0.472
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.038

96.296

0.472
  ssbB/cilA Streptococcus pneumoniae Rx1

48.077

96.296

0.463
  ssbB/cilA Streptococcus pneumoniae R6

48.077

96.296

0.463
  ssbB/cilA Streptococcus pneumoniae D39

48.077

96.296

0.463
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.667

97.222

0.454
  ssbA Streptococcus mutans UA159

46.667

97.222

0.454
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.794

99.074

0.454
  ssb Latilactobacillus sakei subsp. sakei 23K

43.137

94.444

0.407

Multiple sequence alignment