Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FPL20_RS08315 Genome accession   NZ_CP045478
Coordinates   1601308..1601952 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain JD-014     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596308..1606952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS08285 (FPL20_GE01561) - 1596696..1597064 (-) 369 WP_003243784.1 hypothetical protein -
  FPL20_RS08290 - 1597178..1597303 (-) 126 WP_003228793.1 hypothetical protein -
  FPL20_RS08295 (FPL20_GE01562) degQ 1597525..1597665 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  FPL20_RS08300 (FPL20_GE01563) comQ 1597850..1598749 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  FPL20_RS08305 (FPL20_GE01564) comX 1598737..1598904 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  FPL20_RS08310 comP 1598919..1601227 (+) 2309 Protein_1599 two-component system sensor histidine kinase ComP -
  FPL20_RS08315 (FPL20_GE01567) comA 1601308..1601952 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  FPL20_RS08320 (FPL20_GE01568) yuxO 1601971..1602351 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  FPL20_RS08325 (FPL20_GE01569) mnhG 1602390..1602764 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  FPL20_RS08330 (FPL20_GE01570) mrpF 1602748..1603032 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  FPL20_RS08335 (FPL20_GE01571) mrpE 1603032..1603508 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  FPL20_RS08340 (FPL20_GE01572) mrpD 1603514..1604995 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  FPL20_RS08345 (FPL20_GE01573) mrpC 1604988..1605329 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  FPL20_RS08350 (FPL20_GE01574) mrpB 1605329..1605760 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=394481 FPL20_RS08315 WP_003220716.1 1601308..1601952(+) (comA) [Bacillus subtilis strain JD-014]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=394481 FPL20_RS08315 WP_003220716.1 1601308..1601952(+) (comA) [Bacillus subtilis strain JD-014]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment