Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FIV04_RS12220 | Genome accession | NZ_CP045338 |
| Coordinates | 2754899..2755330 (+) | Length | 143 a.a. |
| NCBI ID | WP_152469276.1 | Uniprot ID | A0A5P9BB77 |
| Organism | Vibrio sp. THAF190c | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2749899..2760330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV04_RS12200 (FIV04_12255) | pdhR | 2751842..2752609 (-) | 768 | WP_032550147.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FIV04_RS12205 (FIV04_12260) | ampD | 2753058..2753606 (-) | 549 | WP_152469275.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FIV04_RS12215 (FIV04_12265) | nadC | 2753755..2754645 (+) | 891 | WP_032550149.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FIV04_RS12220 (FIV04_12270) | pilA | 2754899..2755330 (+) | 432 | WP_152469276.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| FIV04_RS12225 (FIV04_12275) | pilB | 2755331..2757016 (+) | 1686 | WP_152469277.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FIV04_RS12230 (FIV04_12280) | pilC | 2757063..2758292 (+) | 1230 | WP_172974246.1 | type II secretion system F family protein | Machinery gene |
| FIV04_RS12235 (FIV04_12285) | pilD | 2758352..2759221 (+) | 870 | WP_152469278.1 | A24 family peptidase | Machinery gene |
| FIV04_RS12240 (FIV04_12290) | coaE | 2759225..2759833 (+) | 609 | WP_152469279.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 14587.58 Da Isoelectric Point: 8.4889
>NTDB_id=393492 FIV04_RS12220 WP_152469276.1 2754899..2755330(+) (pilA) [Vibrio sp. THAF190c]
MKKRQTKQKGFTLIELMIVVAIIGILSAIAVPAYKDYVAKSAASSALATLRSLLTNADLYAQNNSATTTDLANFGGSSTM
NPLGTISASVVGAGAASTATSTLTFTFSTGEAASGNIQFSKTPVTPWVCANNTSPAIEVDGCS
MKKRQTKQKGFTLIELMIVVAIIGILSAIAVPAYKDYVAKSAASSALATLRSLLTNADLYAQNNSATTTDLANFGGSSTM
NPLGTISASVVGAGAASTATSTLTFTFSTGEAASGNIQFSKTPVTPWVCANNTSPAIEVDGCS
Nucleotide
Download Length: 432 bp
>NTDB_id=393492 FIV04_RS12220 WP_152469276.1 2754899..2755330(+) (pilA) [Vibrio sp. THAF190c]
ATGAAAAAAAGACAAACAAAGCAGAAAGGTTTTACGTTAATTGAGTTGATGATTGTAGTGGCGATTATTGGCATTTTGTC
AGCTATCGCTGTACCAGCATACAAGGATTATGTTGCTAAATCTGCTGCATCATCTGCACTTGCCACACTGCGGTCACTAC
TCACTAATGCAGACTTATACGCTCAAAACAATTCAGCAACGACTACGGACTTAGCTAATTTCGGGGGAAGTTCGACGATG
AACCCTCTTGGCACTATTTCAGCTTCTGTTGTGGGGGCTGGTGCAGCTTCAACAGCAACATCTACACTCACTTTTACATT
TTCAACAGGTGAAGCAGCCTCAGGTAACATTCAATTTTCGAAAACTCCTGTTACTCCTTGGGTATGTGCGAACAATACAA
GTCCTGCAATTGAAGTTGATGGCTGCTCATAA
ATGAAAAAAAGACAAACAAAGCAGAAAGGTTTTACGTTAATTGAGTTGATGATTGTAGTGGCGATTATTGGCATTTTGTC
AGCTATCGCTGTACCAGCATACAAGGATTATGTTGCTAAATCTGCTGCATCATCTGCACTTGCCACACTGCGGTCACTAC
TCACTAATGCAGACTTATACGCTCAAAACAATTCAGCAACGACTACGGACTTAGCTAATTTCGGGGGAAGTTCGACGATG
AACCCTCTTGGCACTATTTCAGCTTCTGTTGTGGGGGCTGGTGCAGCTTCAACAGCAACATCTACACTCACTTTTACATT
TTCAACAGGTGAAGCAGCCTCAGGTAACATTCAATTTTCGAAAACTCCTGTTACTCCTTGGGTATGTGCGAACAATACAA
GTCCTGCAATTGAAGTTGATGGCTGCTCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.26 |
100 |
0.483 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.735 |
100 |
0.42 |
| pilA | Pseudomonas aeruginosa PAK |
39.333 |
100 |
0.413 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.931 |
100 |
0.385 |
| pilA | Vibrio cholerae strain A1552 |
37.931 |
100 |
0.385 |
| pilA | Vibrio cholerae C6706 |
37.931 |
100 |
0.385 |