Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FIV08_RS13120 Genome accession   NZ_CP045324
Coordinates   2826918..2828135 (+) Length   405 a.a.
NCBI ID   WP_152438649.1    Uniprot ID   -
Organism   Marinobacter sp. THAF197a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2821918..2833135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV08_RS13105 (FIV08_13250) - 2822354..2824258 (-) 1905 WP_152438647.1 tetratricopeptide repeat protein -
  FIV08_RS13110 (FIV08_13255) pilA2 2824362..2824811 (-) 450 WP_323847456.1 pilin Machinery gene
  FIV08_RS13115 (FIV08_13260) pilB 2825203..2826915 (+) 1713 WP_152438648.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FIV08_RS13120 (FIV08_13265) pilC 2826918..2828135 (+) 1218 WP_152438649.1 type II secretion system F family protein Machinery gene
  FIV08_RS13125 (FIV08_13270) pilD 2828223..2829098 (+) 876 WP_152438650.1 prepilin peptidase Machinery gene
  FIV08_RS13130 (FIV08_13275) coaE 2829240..2829845 (+) 606 WP_152438651.1 dephospho-CoA kinase -
  FIV08_RS13135 (FIV08_13280) - 2829928..2830926 (+) 999 WP_228715418.1 hypothetical protein -
  FIV08_RS13140 (FIV08_13285) tsaA 2830928..2831677 (+) 750 WP_152438653.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44433.36 Da        Isoelectric Point: 9.4057

>NTDB_id=393454 FIV08_RS13120 WP_152438649.1 2826918..2828135(+) (pilC) [Marinobacter sp. THAF197a]
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMAIRNDISSGTGFAASLRKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQFIIGISEWMQKWWFIVLLGIVGTIYLFK
ESKRRSQKFSDIVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMNIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDDMLQKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=393454 FIV08_RS13120 WP_152438649.1 2826918..2828135(+) (pilC) [Marinobacter sp. THAF197a]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTATGTCTGGGAAGGCAAAGACAGAAAAGGCAACAAGACCAAAGGAGAGCT
GACGGGCTCAAACTTGGCTCTTGTTAAGGCTCAGCTACGTAAGCAGGGCATTATCCCAGACAAAGTGAAAAAGAAGCCCA
AGCCATTGTTTGGTGGCAGCAAGAAAATCACTCCGTTTGACATAGCGATGCTGACCCGACAGCTAGCCACAATGATGAAA
GCCGGTGTGCCTTTGGTGCAGAGCTTTGACATTGTTGCTGATGGTCTCGAGAACAAGGGTCTTCAAGAACTGGTCATGGC
CATCCGGAATGATATTTCCTCTGGTACAGGTTTCGCTGCATCCTTGCGTAAACATCCAAAATACTTTGACGATCTGTACT
GCAACCTTGTGGATTCTGGCGAGAAAGCAGGTGCACTTGAGCAGATGCTGGACCGTATTGCTACCTATCTTGAGAAAACG
GAAATTCTGAAGAAGAAGGTCAAAAAGGCGATGACCTACCCTATCGCCGTTATCGTAGTCGCGATTGTGGTTACAGCTAT
CCTGTTGGTGAAGGTAGTTCCGCAGTTCGAAAGCCTGTTCCAGGGCTTTGGAGCGGATTTGCCCGTGTTTACTCAGTTCA
TCATCGGTATATCTGAATGGATGCAGAAATGGTGGTTTATCGTTCTGCTTGGGATTGTAGGTACGATCTACTTATTCAAG
GAATCTAAGCGCCGATCCCAAAAATTCTCTGATATTGTCGATAAATACGTTTTGAAGCTGCCCATTGTTGGCGAAATTCT
GGATAAGTCTGCGGTTGCCAAGTTCGGCCGCGTGCTTTCTACTACGTTCGCAGCGGGTGTGCCTCTGGTAGATGCTCTGG
ACTCGGTAGCTGGTGCTACCGGGAATGCGGTTTATCGGGATGCGGTTATGAACATCAAGAATGATGTCTCCAGCGGTACG
CAACTACAGGCTTCAATGCGTCAGCAGGATGTGTTTCCGGTTATGGCCGTCCAGCTTACTGCTATCGGCGAAGAGTCCGG
CAATCTTGACGATATGCTGCAGAAAGTTGCGGAGCATTACGAGGCCGTTGTAGATGACATGGTAGACAACCTCACGGCAC
TGATGGAGCCGATGATTATGGCTGTCCTTGGTGTGCTTGTGGGTGGCTTGATCATCGGCATGTACCTGCCAATCTTCCAG
ATGGGGCAAGTGGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.926

100

0.659
  pilC Acinetobacter baumannii D1279779

58.519

100

0.585
  pilC Acinetobacter baylyi ADP1

58.128

100

0.583
  pilC Legionella pneumophila strain ERS1305867

53.448

100

0.536
  pilG Neisseria gonorrhoeae MS11

42.963

100

0.43
  pilG Neisseria meningitidis 44/76-A

42.716

100

0.427
  pilC Vibrio campbellii strain DS40M4

39.163

100

0.393
  pilC Vibrio cholerae strain A1552

38.765

100

0.388

Multiple sequence alignment