Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | FIV08_RS13110 | Genome accession | NZ_CP045324 |
| Coordinates | 2824362..2824811 (-) | Length | 149 a.a. |
| NCBI ID | WP_323847456.1 | Uniprot ID | - |
| Organism | Marinobacter sp. THAF197a | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2819362..2829811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV08_RS13095 (FIV08_13240) | - | 2820209..2821384 (-) | 1176 | WP_152438645.1 | glycosyltransferase family 4 protein | - |
| FIV08_RS13100 (FIV08_13245) | - | 2821430..2822284 (-) | 855 | WP_216646150.1 | glycosyltransferase family 2 protein | - |
| FIV08_RS13105 (FIV08_13250) | - | 2822354..2824258 (-) | 1905 | WP_152438647.1 | tetratricopeptide repeat protein | - |
| FIV08_RS13110 (FIV08_13255) | pilA2 | 2824362..2824811 (-) | 450 | WP_323847456.1 | pilin | Machinery gene |
| FIV08_RS13115 (FIV08_13260) | pilB | 2825203..2826915 (+) | 1713 | WP_152438648.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FIV08_RS13120 (FIV08_13265) | pilC | 2826918..2828135 (+) | 1218 | WP_152438649.1 | type II secretion system F family protein | Machinery gene |
| FIV08_RS13125 (FIV08_13270) | pilD | 2828223..2829098 (+) | 876 | WP_152438650.1 | prepilin peptidase | Machinery gene |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15604.66 Da Isoelectric Point: 4.9812
>NTDB_id=393452 FIV08_RS13110 WP_323847456.1 2824362..2824811(-) (pilA2) [Marinobacter sp. THAF197a]
MQKIQMKKGQQGFTLIELMIVVAIIGILAAVAIPAYQDYTIRAKVSEVLTVASAARTSVAEYYISTGSMPATTTAAGINT
DTGQSDYITNIAFATSSTGTQLTYTLGNLGGTADASTFEYLVTGNNNGVQVDCTGGSLEAKYRPANCRP
MQKIQMKKGQQGFTLIELMIVVAIIGILAAVAIPAYQDYTIRAKVSEVLTVASAARTSVAEYYISTGSMPATTTAAGINT
DTGQSDYITNIAFATSSTGTQLTYTLGNLGGTADASTFEYLVTGNNNGVQVDCTGGSLEAKYRPANCRP
Nucleotide
Download Length: 450 bp
>NTDB_id=393452 FIV08_RS13110 WP_323847456.1 2824362..2824811(-) (pilA2) [Marinobacter sp. THAF197a]
ATGCAGAAGATTCAAATGAAAAAAGGTCAGCAGGGTTTCACTCTGATCGAACTGATGATCGTTGTTGCAATCATTGGTAT
TTTGGCGGCTGTTGCTATTCCTGCGTATCAGGACTACACAATCCGTGCCAAGGTTAGTGAGGTTTTGACGGTTGCTAGTG
CTGCCCGCACAAGTGTCGCCGAATACTACATCAGCACTGGTAGCATGCCCGCGACCACAACCGCTGCTGGCATTAACACA
GATACCGGCCAGAGCGATTACATCACTAATATTGCTTTTGCTACTTCTTCTACTGGTACTCAGTTGACCTACACATTGGG
CAATTTGGGTGGTACTGCAGACGCCAGCACTTTTGAATACCTCGTAACTGGTAATAACAATGGCGTTCAAGTTGATTGCA
CAGGCGGTTCCCTCGAGGCTAAATATCGTCCTGCAAACTGTCGCCCGTAA
ATGCAGAAGATTCAAATGAAAAAAGGTCAGCAGGGTTTCACTCTGATCGAACTGATGATCGTTGTTGCAATCATTGGTAT
TTTGGCGGCTGTTGCTATTCCTGCGTATCAGGACTACACAATCCGTGCCAAGGTTAGTGAGGTTTTGACGGTTGCTAGTG
CTGCCCGCACAAGTGTCGCCGAATACTACATCAGCACTGGTAGCATGCCCGCGACCACAACCGCTGCTGGCATTAACACA
GATACCGGCCAGAGCGATTACATCACTAATATTGCTTTTGCTACTTCTTCTACTGGTACTCAGTTGACCTACACATTGGG
CAATTTGGGTGGTACTGCAGACGCCAGCACTTTTGAATACCTCGTAACTGGTAATAACAATGGCGTTCAAGTTGATTGCA
CAGGCGGTTCCCTCGAGGCTAAATATCGTCCTGCAAACTGTCGCCCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.064 |
94.631 |
0.483 |
| pilA2 | Legionella pneumophila str. Paris |
51.064 |
94.631 |
0.483 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
39.759 |
100 |
0.443 |
| comP | Acinetobacter baylyi ADP1 |
42.857 |
98.658 |
0.423 |
| pilE | Neisseria gonorrhoeae MS11 |
37.821 |
100 |
0.396 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.419 |
100 |
0.389 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.356 |
97.987 |
0.376 |