Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FIV08_RS13125 Genome accession   NZ_CP045324
Coordinates   2828223..2829098 (+) Length   291 a.a.
NCBI ID   WP_152438650.1    Uniprot ID   -
Organism   Marinobacter sp. THAF197a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823223..2834098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV08_RS13110 (FIV08_13255) pilA2 2824362..2824811 (-) 450 WP_323847456.1 pilin Machinery gene
  FIV08_RS13115 (FIV08_13260) pilB 2825203..2826915 (+) 1713 WP_152438648.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FIV08_RS13120 (FIV08_13265) pilC 2826918..2828135 (+) 1218 WP_152438649.1 type II secretion system F family protein Machinery gene
  FIV08_RS13125 (FIV08_13270) pilD 2828223..2829098 (+) 876 WP_152438650.1 prepilin peptidase Machinery gene
  FIV08_RS13130 (FIV08_13275) coaE 2829240..2829845 (+) 606 WP_152438651.1 dephospho-CoA kinase -
  FIV08_RS13135 (FIV08_13280) - 2829928..2830926 (+) 999 WP_228715418.1 hypothetical protein -
  FIV08_RS13140 (FIV08_13285) tsaA 2830928..2831677 (+) 750 WP_152438653.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  FIV08_RS13145 (FIV08_13290) - 2831721..2834075 (+) 2355 WP_152438654.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32249.45 Da        Isoelectric Point: 6.6728

>NTDB_id=393455 FIV08_RS13125 WP_152438650.1 2828223..2829098(+) (pilD) [Marinobacter sp. THAF197a]
MPSLDQLLSTPWLLYLTVTLFSLCIGSFLNVVILRLPKMMQQEWRCQCEEFLEVPEKQRKQETPLSLSKPASTCPSCGHQ
IRAWENIPVISWLVLRGKCSSCKAPISPRYPIIEAITAIFSVVTVALLGPTESALWALLLVWALMALTMIDFDTQLLPDS
ITLPLMWLGLVLNYFGVLTDFNSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAVVGIALMVFKKHGREVPIPFGPYLAAAGLLCLWFGDEIQAVWFGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=393455 FIV08_RS13125 WP_152438650.1 2828223..2829098(+) (pilD) [Marinobacter sp. THAF197a]
ATGCCCTCTCTAGACCAACTCCTCTCCACCCCCTGGCTCCTATACCTCACCGTCACCCTATTCTCCCTCTGCATCGGCAG
CTTCCTGAACGTAGTCATCCTGCGCCTGCCAAAAATGATGCAGCAGGAATGGCGCTGCCAGTGTGAGGAGTTTCTGGAAG
TACCGGAGAAGCAACGAAAGCAGGAAACACCACTTTCCCTTTCAAAGCCCGCGTCTACCTGCCCCTCCTGTGGCCATCAG
ATTCGGGCCTGGGAAAATATCCCGGTGATCAGCTGGCTGGTGCTGCGAGGCAAATGTTCGTCTTGTAAAGCGCCTATTTC
GCCGCGCTACCCAATCATCGAAGCCATTACCGCCATCTTCTCGGTAGTAACCGTCGCTTTACTGGGACCAACCGAATCCG
CGCTTTGGGCCTTGCTGCTGGTATGGGCCCTGATGGCGCTGACGATGATCGATTTCGACACACAACTGCTGCCAGACAGC
ATCACCCTGCCCCTGATGTGGCTCGGCTTGGTGTTGAACTATTTCGGCGTGCTGACAGATTTTAACAGTGCCTTCTGGGG
TGCCGTTGCCGGGTACTTGTCGCTTTGGTCGGTGTATTGGTTGTTCAAGCTGGTAACTGGCAAAGAAGGTATGGGGCATG
GGGATTTCAAGCTGTTGGCGGCCCTGGGTGCCTGGCTGGGATGGCAGTTGTTGCCGGCGGTGATTTTGCTGTCGTCGCTG
GTGGGGGCGGTGGTTGGTATTGCGCTGATGGTGTTCAAAAAGCACGGGCGTGAGGTGCCGATTCCGTTTGGGCCTTATCT
GGCGGCGGCTGGGTTGCTTTGTTTGTGGTTTGGGGATGAAATTCAGGCGGTTTGGTTTGGGTTTTTGGGGGTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

56.204

94.158

0.529
  pilD Acinetobacter nosocomialis M2

55.839

94.158

0.526
  pilD Vibrio cholerae strain A1552

54.579

93.814

0.512
  pilD Vibrio campbellii strain DS40M4

53.43

95.189

0.509
  pilD Neisseria gonorrhoeae MS11

48.092

90.034

0.433

Multiple sequence alignment