Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GB930_RS19805 Genome accession   NZ_CP045311
Coordinates   4346498..4347739 (-) Length   413 a.a.
NCBI ID   WP_010635960.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain Aer_OnIF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4341498..4352739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB930_RS19775 (GB930_19815) - 4342343..4343521 (+) 1179 WP_242762025.1 tetratricopeptide repeat protein -
  GB930_RS19780 (GB930_19820) mutT 4343530..4343943 (+) 414 WP_242762034.1 8-oxo-dGTP diphosphatase MutT -
  GB930_RS19785 (GB930_19825) yacG 4344005..4344199 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  GB930_RS19790 (GB930_19830) zapD 4344209..4344931 (-) 723 WP_025202564.1 cell division protein ZapD -
  GB930_RS19795 (GB930_19835) coaE 4344969..4345583 (-) 615 WP_242762039.1 dephospho-CoA kinase -
  GB930_RS19800 (GB930_19840) pilD 4345603..4346475 (-) 873 WP_042007258.1 A24 family peptidase Machinery gene
  GB930_RS19805 (GB930_19845) pilC 4346498..4347739 (-) 1242 WP_010635960.1 type II secretion system F family protein Machinery gene
  GB930_RS19810 (GB930_19850) pilB 4347855..4349570 (-) 1716 WP_185450531.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  GB930_RS19815 (GB930_19855) - 4349561..4350001 (-) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GB930_RS19820 (GB930_19860) nadC 4350323..4351177 (-) 855 WP_242762041.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GB930_RS19825 (GB930_19865) - 4351182..4351652 (-) 471 WP_095591545.1 retropepsin-like aspartic protease -
  GB930_RS19830 (GB930_19870) ampD 4351776..4352348 (+) 573 WP_242762042.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45468.58 Da        Isoelectric Point: 9.8834

>NTDB_id=393397 GB930_RS19805 WP_010635960.1 4346498..4347739(-) (pilC) [Aeromonas dhakensis strain Aer_OnIF1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGARIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=393397 GB930_RS19805 WP_010635960.1 4346498..4347739(-) (pilC) [Aeromonas dhakensis strain Aer_OnIF1]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAGGATCAAGCCGATGGACATTGCCGTCGTCTCCCGT
CAGATCACCACCATGCTGTCAGCTGGTGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAAAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGAACCCCAATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAAACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGCGCCTCGCAAAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

48.241

96.368

0.465
  pilC Vibrio campbellii strain DS40M4

47.607

96.126

0.458
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment