Detailed information NTG0393396

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GB930_RS19800
• Genome accession: NZ_CP045311
• Coordinates: 4345603..4346475 (-)
• Length: 290 a.a.
• NCBI ID: WP_042007258.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain Aer_OnIF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4340603..4351475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GB930_RS19775 (GB930_19815)	-	4342343..4343521 (+)	1179	WP_242762025.1	tetratricopeptide repeat protein	-
GB930_RS19780 (GB930_19820)	mutT	4343530..4343943 (+)	414	WP_242762034.1	8-oxo-dGTP diphosphatase MutT	-
GB930_RS19785 (GB930_19825)	yacG	4344005..4344199 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
GB930_RS19790 (GB930_19830)	zapD	4344209..4344931 (-)	723	WP_025202564.1	cell division protein ZapD	-
GB930_RS19795 (GB930_19835)	coaE	4344969..4345583 (-)	615	WP_242762039.1	dephospho-CoA kinase	-
GB930_RS19800 (GB930_19840)	pilD	4345603..4346475 (-)	873	WP_042007258.1	A24 family peptidase	Machinery gene
GB930_RS19805 (GB930_19845)	pilC	4346498..4347739 (-)	1242	WP_010635960.1	type II secretion system F family protein	Machinery gene
GB930_RS19810 (GB930_19850)	pilB	4347855..4349570 (-)	1716	WP_185450531.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GB930_RS19815 (GB930_19855)	-	4349561..4350001 (-)	441	WP_010635961.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GB930_RS19820 (GB930_19860)	nadC	4350323..4351177 (-)	855	WP_242762041.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32562.93 Da
• Isoelectric Point: 7.0271

>NTDB_id=393396 GB930_RS19800 WP_042007258.1 4345603..4346475(-) (pilD) [Aeromonas dhakensis strain Aer_OnIF1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWRAEYLSYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=393396 GB930_RS19800 WP_042007258.1 4345603..4346475(-) (pilD) [Aeromonas dhakensis strain Aer_OnIF1]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCGGGCCGAATACCTCAGCTATTTCA
ATCCAGAGACACAACCGCAGCAGGAGGAACGCTACAACCTGATGGTGCCACGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGTTGGCTCTGGCTCAAGGGGCGTTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGTTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCAGCGCTGGGGGCCTGGCTCGGCTGGCAGGCCCTGCCCATCGTGTTACTGCTCTCCTCCCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGCCCTTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	62.238	98.621	0.614
pilD	Vibrio campbellii strain DS40M4	56.993	98.621	0.562
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462