Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TMAR_RS11810 Genome accession   NC_014831
Coordinates   2825652..2826071 (-) Length   139 a.a.
NCBI ID   WP_013496726.1    Uniprot ID   -
Organism   Thermaerobacter marianensis DSM 12885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2816505..2844643 2825652..2826071 within 0


Gene organization within MGE regions


Location: 2816505..2844643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMAR_RS11760 (Tmar_2346) - 2816505..2817560 (-) 1056 WP_013496718.1 hypothetical protein -
  TMAR_RS11765 (Tmar_2347) - 2817831..2819240 (-) 1410 WP_013496719.1 peptidoglycan DD-metalloendopeptidase family protein -
  TMAR_RS11775 (Tmar_2348) - 2819766..2821115 (-) 1350 WP_013496720.1 hypothetical protein -
  TMAR_RS11785 (Tmar_2349) - 2821750..2823057 (-) 1308 WP_013496721.1 adenylosuccinate synthase -
  TMAR_RS11790 (Tmar_2350) dnaB 2823073..2824404 (-) 1332 WP_013496722.1 replicative DNA helicase -
  TMAR_RS11795 (Tmar_2351) rplI 2824409..2824858 (-) 450 WP_013496723.1 50S ribosomal protein L9 -
  TMAR_RS11800 (Tmar_2352) - 2824891..2825223 (-) 333 WP_013496724.1 MazG-like family protein -
  TMAR_RS11805 (Tmar_2353) rpsR 2825407..2825634 (-) 228 WP_013496725.1 30S ribosomal protein S18 -
  TMAR_RS11810 (Tmar_2354) ssb 2825652..2826071 (-) 420 WP_013496726.1 single-stranded DNA-binding protein Machinery gene
  TMAR_RS11815 (Tmar_2355) rpsF 2826245..2826538 (-) 294 WP_013496727.1 30S ribosomal protein S6 -
  TMAR_RS11820 (Tmar_2356) - 2827042..2827284 (-) 243 WP_013496728.1 DUF951 domain-containing protein -
  TMAR_RS13790 (Tmar_2357) - 2827281..2828033 (-) 753 WP_013496729.1 CvpA family protein -
  TMAR_RS11830 (Tmar_2358) - 2828074..2828784 (-) 711 WP_013496730.1 ABC transporter ATP-binding protein -
  TMAR_RS11835 (Tmar_2359) - 2828784..2829554 (-) 771 WP_148235952.1 ABC transporter ATP-binding protein -
  TMAR_RS11840 (Tmar_2360) - 2829632..2830717 (-) 1086 WP_013496732.1 branched-chain amino acid ABC transporter permease -
  TMAR_RS11845 (Tmar_2361) - 2830965..2831870 (-) 906 WP_013496733.1 branched-chain amino acid ABC transporter permease -
  TMAR_RS11850 (Tmar_2362) - 2832198..2833403 (-) 1206 WP_013496734.1 ABC transporter substrate-binding protein -
  TMAR_RS14530 (Tmar_2363) yyaC 2833888..2834877 (+) 990 WP_013496735.1 spore protease YyaC -
  TMAR_RS11860 (Tmar_2364) - 2834978..2836039 (-) 1062 WP_013496736.1 diacylglycerol kinase family protein -
  TMAR_RS11865 (Tmar_2365) - 2836225..2836827 (-) 603 WP_013496737.1 DUF4446 family protein -
  TMAR_RS11870 (Tmar_2366) - 2836914..2837804 (-) 891 WP_013496738.1 ParB/RepB/Spo0J family partition protein -
  TMAR_RS11875 (Tmar_2367) - 2837776..2838558 (-) 783 WP_013496739.1 AAA family ATPase -
  TMAR_RS14815 (Tmar_2368) - 2838693..2839637 (-) 945 WP_013496740.1 ParB/RepB/Spo0J family partition protein -
  TMAR_RS11885 (Tmar_2369) rsmG 2839768..2840520 (-) 753 WP_013496741.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TMAR_RS11890 (Tmar_2370) jag 2840618..2841313 (-) 696 WP_013496742.1 RNA-binding cell elongation regulator Jag/EloR -
  TMAR_RS11895 (Tmar_2371) - 2841294..2841968 (-) 675 WP_013496743.1 YidC/Oxa1 family membrane protein insertase -
  TMAR_RS11900 (Tmar_2372) yidD 2842307..2842516 (-) 210 WP_042502310.1 membrane protein insertion efficiency factor YidD -
  TMAR_RS11905 (Tmar_2373) rnpA 2842513..2843088 (-) 576 WP_013496745.1 ribonuclease P protein component -
  TMAR_RS11910 (Tmar_2374) rpmH 2843104..2843238 (-) 135 WP_013496746.1 50S ribosomal protein L34 -
  TMAR_RS11915 (Tmar_2375) - 2843489..2844643 (+) 1155 WP_013495303.1 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15161.05 Da        Isoelectric Point: 4.7796

>NTDB_id=39274 TMAR_RS11810 WP_013496726.1 2825652..2826071(-) (ssb) [Thermaerobacter marianensis DSM 12885]
MLNVVVLIGRLVRDPELRYTPSGVAVGGFTLAVDRPFTNQQGEREADFIDIVVWRKLAETCANHLSKGRLVAVRGRLQVR
SYETQDGQRRRVAEVVADDVRFLDRGPGADRGAAPGSPAGDELADFGDVTGLPDDDIPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=39274 TMAR_RS11810 WP_013496726.1 2825652..2826071(-) (ssb) [Thermaerobacter marianensis DSM 12885]
GTGCTGAACGTCGTCGTTCTGATCGGCCGGCTGGTGCGCGATCCCGAGTTGCGCTACACGCCCAGCGGCGTGGCCGTCGG
CGGGTTTACCCTGGCGGTGGACCGGCCCTTCACCAACCAGCAGGGCGAACGCGAGGCCGACTTCATCGACATCGTCGTTT
GGCGGAAGCTGGCCGAGACCTGCGCCAACCACCTCAGCAAGGGACGGCTGGTGGCGGTGCGCGGCCGGTTGCAGGTCCGC
TCCTACGAGACCCAGGACGGCCAGCGCCGGCGCGTGGCCGAGGTGGTGGCCGACGACGTGCGGTTCCTCGACCGCGGTCC
CGGCGCGGATCGCGGCGCGGCGCCGGGTAGCCCGGCCGGCGACGAGCTGGCGGACTTCGGTGACGTGACAGGCCTGCCGG
ACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.294

100

0.554
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

74.82

0.489
  ssbB/cilA Streptococcus mitis SK321

41.727

100

0.417
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.271

76.978

0.41
  ssbA Streptococcus mutans UA159

41.007

100

0.41
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.007

100

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.007

100

0.41
  ssbB/cilA Streptococcus pneumoniae Rx1

40.288

100

0.403
  ssbB/cilA Streptococcus pneumoniae D39

40.288

100

0.403
  ssbB/cilA Streptococcus pneumoniae R6

40.288

100

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

40.288

100

0.403

Multiple sequence alignment