Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GBK02_RS05200 Genome accession   NZ_CP045202
Coordinates   1063065..1064291 (-) Length   408 a.a.
NCBI ID   WP_203468687.1    Uniprot ID   -
Organism   Dechloromonas sp. TW-R-39-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058065..1069291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBK02_RS05165 (GBK02_05145) nudB 1058217..1058669 (-) 453 WP_203468681.1 dihydroneopterin triphosphate diphosphatase -
  GBK02_RS05170 (GBK02_05150) - 1058666..1059094 (-) 429 WP_203468682.1 barstar family protein -
  GBK02_RS05175 (GBK02_05155) - 1059098..1059454 (-) 357 WP_203468683.1 ribonuclease domain-containing protein -
  GBK02_RS05180 (GBK02_05160) aspS 1059461..1061260 (-) 1800 WP_203468684.1 aspartate--tRNA ligase -
  GBK02_RS05185 (GBK02_05165) - 1061278..1061892 (-) 615 WP_203469305.1 DUF502 domain-containing protein -
  GBK02_RS05190 (GBK02_05170) - 1061892..1062146 (-) 255 WP_203468685.1 FmdB family zinc ribbon protein -
  GBK02_RS05195 (GBK02_05175) pilD 1062217..1063065 (-) 849 WP_203468686.1 A24 family peptidase Machinery gene
  GBK02_RS05200 (GBK02_05180) pilC 1063065..1064291 (-) 1227 WP_203468687.1 type II secretion system F family protein Machinery gene
  GBK02_RS05205 (GBK02_05185) pilB 1064307..1066022 (-) 1716 WP_203468688.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GBK02_RS05210 (GBK02_05190) - 1066101..1067348 (-) 1248 WP_239003179.1 HlyC/CorC family transporter -
  GBK02_RS05215 (GBK02_05195) - 1067376..1068215 (-) 840 WP_203468690.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44355.19 Da        Isoelectric Point: 9.9897

>NTDB_id=392660 GBK02_RS05200 WP_203468687.1 1063065..1064291(-) (pilC) [Dechloromonas sp. TW-R-39-2]
MATAAKPKASAVKESPFLWEGKNRDGKTVRGEMRAASESVVQTTLRRQGITNAKIKKVRFKSGGRITGKDIALFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKYPLQFDALYCNLVSAGEQAGILDSLLDRLATYQ
EKIIAIKSKIKSALFYPIAVIVVAFIITAVIMIFVIPAFKDVFKSFGADLPAPTLIVIAISDFFVAYWWAIFGLIGGGLY
FFIESWRRSEKIQIVMDRLLLRAPVFGEIVRKSVIARWTRTLATMFAAGVPLVESLDSVGGAAGNHVYKIATKQIQGEVS
TGTSLTTAMQNVNIFPNMVTQMVAIGEESGALDSMLSKVADFFEQEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVSMYLP
IFKLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=392660 GBK02_RS05200 WP_203468687.1 1063065..1064291(-) (pilC) [Dechloromonas sp. TW-R-39-2]
ATGGCTACCGCCGCCAAACCGAAAGCCTCGGCAGTCAAGGAGTCCCCTTTTTTATGGGAAGGCAAGAATCGCGACGGAAA
AACCGTACGCGGAGAAATGCGTGCGGCAAGCGAGTCCGTCGTCCAGACTACACTGCGGCGCCAAGGCATCACGAATGCAA
AGATCAAAAAAGTCCGCTTCAAAAGTGGCGGTCGGATCACTGGCAAGGATATCGCCCTGTTCACCCGGCAATTGGCGACC
ATGATGAAGTCAGGCGTCCCCCTGCTCCAGTCGTTTGATATTGTCGGAAGAGGGCACTCAAACCCAGCCGTAGGAAAACT
GCTTCTCGACATCAAGGCAGATGTCGAGACAGGCAGTTCACTTTCTCAAGCATTTCGAAAATACCCACTGCAGTTCGACG
CCCTCTACTGCAATTTGGTCTCAGCCGGTGAACAGGCCGGCATTCTGGATAGCCTTCTAGATCGCCTAGCGACTTACCAA
GAAAAAATCATCGCTATCAAGAGCAAGATCAAGTCAGCCTTGTTCTATCCGATCGCAGTTATTGTCGTGGCATTCATTAT
TACTGCCGTGATCATGATCTTCGTCATTCCGGCATTTAAAGATGTTTTCAAAAGTTTTGGTGCAGACCTGCCTGCACCAA
CATTGATTGTGATTGCCATATCGGATTTTTTTGTCGCTTATTGGTGGGCCATATTCGGGCTTATCGGCGGAGGTCTGTAC
TTCTTTATCGAAAGCTGGCGCCGCTCCGAAAAAATACAAATCGTCATGGACCGCCTGCTGTTGCGTGCACCAGTCTTCGG
AGAAATAGTCCGAAAATCCGTTATTGCCCGGTGGACCAGAACATTGGCAACCATGTTTGCGGCAGGCGTTCCTCTCGTTG
AGTCACTCGACTCGGTGGGTGGTGCTGCCGGCAACCACGTGTACAAAATTGCGACAAAGCAGATTCAAGGCGAAGTATCC
ACAGGTACCAGCCTGACCACGGCAATGCAGAACGTGAACATTTTCCCGAATATGGTGACACAAATGGTTGCGATCGGAGA
AGAATCCGGAGCTCTGGACTCAATGCTTTCCAAGGTTGCTGACTTCTTTGAACAGGAAGTCGATGATGCGGTCGAGGCCA
TGTCCAGTCTGATGGAACCCATCATCATGGTCGTTCTGGGTACACTGATCGGCGGCATGGTGGTTTCAATGTACCTCCCC
ATATTCAAACTTGGTTCAGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.218

99.02

0.527
  pilC Pseudomonas stutzeri DSM 10701

53.616

98.284

0.527
  pilG Neisseria gonorrhoeae MS11

52.381

97.794

0.512
  pilG Neisseria meningitidis 44/76-A

52.13

97.794

0.51
  pilC Acinetobacter baumannii D1279779

50.125

97.794

0.49
  pilC Acinetobacter baylyi ADP1

50.126

97.304

0.488
  pilC Vibrio cholerae strain A1552

40.909

97.059

0.397
  pilC Thermus thermophilus HB27

38.015

100

0.385
  pilC Vibrio campbellii strain DS40M4

38.806

98.529

0.382

Multiple sequence alignment