Detailed information NTG0392659

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GBK02_RS05195
• Genome accession: NZ_CP045202
• Coordinates: 1062217..1063065 (-)
• Length: 282 a.a.
• NCBI ID: WP_203468686.1
• Uniprot ID: A0A974Y743
• Organism: Dechloromonas sp. TW-R-39-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1057217..1068065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBK02_RS05160 (GBK02_05140)	argB	1057264..1058151 (-)	888	WP_203468680.1	acetylglutamate kinase	-
GBK02_RS05165 (GBK02_05145)	nudB	1058217..1058669 (-)	453	WP_203468681.1	dihydroneopterin triphosphate diphosphatase	-
GBK02_RS05170 (GBK02_05150)	-	1058666..1059094 (-)	429	WP_203468682.1	barstar family protein	-
GBK02_RS05175 (GBK02_05155)	-	1059098..1059454 (-)	357	WP_203468683.1	ribonuclease domain-containing protein	-
GBK02_RS05180 (GBK02_05160)	aspS	1059461..1061260 (-)	1800	WP_203468684.1	aspartate--tRNA ligase	-
GBK02_RS05185 (GBK02_05165)	-	1061278..1061892 (-)	615	WP_203469305.1	DUF502 domain-containing protein	-
GBK02_RS05190 (GBK02_05170)	-	1061892..1062146 (-)	255	WP_203468685.1	FmdB family zinc ribbon protein	-
GBK02_RS05195 (GBK02_05175)	pilD	1062217..1063065 (-)	849	WP_203468686.1	A24 family peptidase	Machinery gene
GBK02_RS05200 (GBK02_05180)	pilC	1063065..1064291 (-)	1227	WP_203468687.1	type II secretion system F family protein	Machinery gene
GBK02_RS05205 (GBK02_05185)	pilB	1064307..1066022 (-)	1716	WP_203468688.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GBK02_RS05210 (GBK02_05190)	-	1066101..1067348 (-)	1248	WP_239003179.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 30131.87 Da
• Isoelectric Point: 7.6109

>NTDB_id=392659 GBK02_RS05195 WP_203468686.1 1062217..1063065(-) (pilD) [Dechloromonas sp. TW-R-39-2]
MLPDSLAVLAGMAAVLGLCIGSFLNVVIHRLPKMMELDWHAQCADLQGKPVSTGEALSLSKPSSRCPACGHCITASQNIP
VISYLLLKGKCASCHTKISIRYPVIEFITGALSAFTVWHFGPSLQALGALFLIWMLIGLAAIDFDTQLLPDSMTLPLLWC
GLALNITGTFTDLPSAVIGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWQMLPTIILLSSVVGAGVGIT
LIIAARHGRNVPIPFGPYLAAAGGIALFWGTELTHRYLELIY

Nucleotide

• Length: 849 bp

>NTDB_id=392659 GBK02_RS05195 WP_203468686.1 1062217..1063065(-) (pilD) [Dechloromonas sp. TW-R-39-2]
ATGCTTCCTGACTCACTTGCTGTTCTTGCCGGCATGGCAGCCGTATTGGGCTTGTGTATCGGCAGCTTCCTGAACGTCGT
GATTCACCGACTCCCCAAAATGATGGAGCTCGATTGGCACGCACAGTGCGCCGATTTGCAGGGAAAACCAGTGTCGACCG
GGGAAGCGCTCAGTTTGTCGAAACCTAGCTCCCGTTGCCCGGCGTGCGGTCATTGCATTACGGCCAGTCAAAACATTCCG
GTTATCAGCTATCTGTTGCTCAAAGGAAAATGCGCGTCCTGCCACACGAAAATCTCGATTCGCTACCCTGTTATTGAATT
CATCACCGGAGCCCTTTCCGCCTTCACGGTTTGGCACTTCGGTCCTAGCCTGCAGGCTCTGGGGGCTCTGTTTCTGATCT
GGATGCTGATCGGGCTAGCAGCGATCGACTTTGATACACAACTACTCCCTGATTCCATGACGCTTCCACTGCTCTGGTGC
GGACTGGCGCTGAATATCACAGGCACATTCACGGATCTGCCATCGGCCGTAATTGGCGCAATGGCTGGCTACCTAGCACT
CTGGTCTGTTTTCTGGCTATTCAAACTGGCGACCGGCAAAGAAGGCATGGGATATGGTGACTTCAAACTGCTCGCCGCCC
TCGGTGCATGGCTTGGCTGGCAGATGCTGCCGACCATCATCCTCCTCTCCTCCGTGGTTGGCGCCGGCGTCGGCATTACC
TTGATCATTGCAGCACGACATGGACGCAACGTCCCCATCCCATTCGGCCCTTATCTGGCCGCGGCAGGCGGCATCGCCCT
GTTTTGGGGAACGGAGCTGACACACCGTTACCTTGAACTGATCTACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (130-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.43	98.227	0.525
pilD	Acinetobacter nosocomialis M2	53.069	98.227	0.521
pilD	Vibrio campbellii strain DS40M4	53.846	96.809	0.521
pilD	Vibrio cholerae strain A1552	53.333	95.745	0.511
pilD	Neisseria gonorrhoeae MS11	53.516	90.78	0.486