Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GBN93_RS01570 Genome accession   NZ_CP045103
Coordinates   332184..333410 (-) Length   408 a.a.
NCBI ID   WP_234965189.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327184..338410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS01545 (GBN93_01560) - 328540..328863 (+) 324 WP_125280995.1 pyrimidine/purine nucleoside phosphorylase -
  GBN93_RS01550 (GBN93_01565) rlmB 329005..329754 (+) 750 WP_234965185.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GBN93_RS01555 (GBN93_01570) - 329787..330704 (+) 918 WP_234965186.1 DMT family transporter -
  GBN93_RS01560 (GBN93_01575) coaE 330718..331317 (-) 600 WP_234965187.1 dephospho-CoA kinase -
  GBN93_RS01565 (GBN93_01580) pilD 331324..332184 (-) 861 WP_234965188.1 prepilin peptidase Machinery gene
  GBN93_RS01570 (GBN93_01585) pilC 332184..333410 (-) 1227 WP_234965189.1 type II secretion system F family protein Machinery gene
  GBN93_RS01575 (GBN93_01590) pilB 333441..335153 (-) 1713 WP_234965190.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GBN93_RS01580 (GBN93_01595) tpiA 335433..336224 (+) 792 WP_234965191.1 triose-phosphate isomerase -
  GBN93_RS01585 (GBN93_01600) secG 336238..336567 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  GBN93_RS01615 (GBN93_01630) rimP 337521..338045 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44852.26 Da        Isoelectric Point: 9.7992

>NTDB_id=391941 GBN93_RS01570 WP_234965189.1 332184..333410(-) (pilC) [Acinetobacter johnsonii strain AJ413]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNIFEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=391941 GBN93_RS01570 WP_234965189.1 332184..333410(-) (pilC) [Acinetobacter johnsonii strain AJ413]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTTTTGAAGGCATAATGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGCTTTGAAATTGTGGCTGAAGGTCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCGGGAGCACTCAAAAAATATCCACAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTCGTTGTGGTTGCGGTGATCGT
GACCATTATTTTGATGGTCAAAGTTGTCCCAGTGTTCCAAGATTTATTCAGCTCCTTTGGTGCAGACTTACCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGTTGGATAAAGCTGCACTGAAAGCCCCGATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACCCTCTCTACAACTTTTGCGGCAGGTGTACCCTTAATTG
ATGCCCTCGAATCTACCGCGGGTGCAACCAATAACGTAGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCCGTACAGATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCAACTCACTATGAAAACGAAGTCGATAATGCGGTAGATGGAT
TAACGGCAATGATGGAGCCTCTCATCATGGCAGTCTTGGGTGTACTTGTAGGTGGCCTAGTAATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

61.975

99.265

0.615
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment