Detailed information NTG0391940

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GBN93_RS01565
• Genome accession: NZ_CP045103
• Coordinates: 331324..332184 (-)
• Length: 286 a.a.
• NCBI ID: WP_234965188.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain AJ413
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 326324..337184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBN93_RS01540 (GBN93_01555)	recN	326486..328147 (-)	1662	WP_234965184.1	DNA repair protein RecN	-
GBN93_RS01545 (GBN93_01560)	-	328540..328863 (+)	324	WP_125280995.1	pyrimidine/purine nucleoside phosphorylase	-
GBN93_RS01550 (GBN93_01565)	rlmB	329005..329754 (+)	750	WP_234965185.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GBN93_RS01555 (GBN93_01570)	-	329787..330704 (+)	918	WP_234965186.1	DMT family transporter	-
GBN93_RS01560 (GBN93_01575)	coaE	330718..331317 (-)	600	WP_234965187.1	dephospho-CoA kinase	-
GBN93_RS01565 (GBN93_01580)	pilD	331324..332184 (-)	861	WP_234965188.1	prepilin peptidase	Machinery gene
GBN93_RS01570 (GBN93_01585)	pilC	332184..333410 (-)	1227	WP_234965189.1	type II secretion system F family protein	Machinery gene
GBN93_RS01575 (GBN93_01590)	pilB	333441..335153 (-)	1713	WP_234965190.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GBN93_RS01580 (GBN93_01595)	tpiA	335433..336224 (+)	792	WP_234965191.1	triose-phosphate isomerase	-
GBN93_RS01585 (GBN93_01600)	secG	336238..336567 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31955.41 Da
• Isoelectric Point: 8.2623

>NTDB_id=391940 GBN93_RS01565 WP_234965188.1 331324..332184(-) (pilD) [Acinetobacter johnsonii strain AJ413]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPKCKSA
IRWYQNVPVISWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTVQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAGLGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=391940 GBN93_RS01565 WP_234965188.1 331324..332184(-) (pilD) [Acinetobacter johnsonii strain AJ413]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTGTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATTGG
TAGTTTCCTGAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAACAACCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCAAATGTAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTGATTAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTATTTGGTCCAACAGTCCAAA
TGCTGTTCGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGGTCTAGGCTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG
CTATATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGCAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGTAAAGAAAATCAGCCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Acinetobacter nosocomialis M2	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	54.104	93.706	0.507
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437