Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GBN68_RS01425 Genome accession   NZ_CP045101
Coordinates   304424..305650 (-) Length   408 a.a.
NCBI ID   WP_234955119.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299424..310650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS01400 (GBN68_01400) - 300778..301101 (+) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -
  GBN68_RS01405 (GBN68_01405) rlmB 301244..301993 (+) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GBN68_RS01410 (GBN68_01410) - 302029..302944 (+) 916 Protein_265 DMT family transporter -
  GBN68_RS01415 (GBN68_01415) coaE 302958..303557 (-) 600 WP_234955114.1 dephospho-CoA kinase -
  GBN68_RS01420 (GBN68_01420) pilD 303564..304424 (-) 861 WP_234955116.1 prepilin peptidase Machinery gene
  GBN68_RS01425 (GBN68_01425) pilC 304424..305650 (-) 1227 WP_234955119.1 type II secretion system F family protein Machinery gene
  GBN68_RS01430 (GBN68_01430) pilB 305681..307393 (-) 1713 WP_234955121.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GBN68_RS01435 (GBN68_01435) tpiA 307673..308464 (+) 792 WP_234955123.1 triose-phosphate isomerase -
  GBN68_RS01440 (GBN68_01440) secG 308478..308807 (+) 330 WP_168159357.1 preprotein translocase subunit SecG -
  GBN68_RS01470 (GBN68_01470) rimP 309759..310283 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44844.26 Da        Isoelectric Point: 9.7992

>NTDB_id=391899 GBN68_RS01425 WP_234955119.1 304424..305650(-) (pilC) [Acinetobacter johnsonii strain AJ210]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVLIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=391899 GBN68_RS01425 WP_234955119.1 304424..305650(-) (pilC) [Acinetobacter johnsonii strain AJ210]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGTATTAAAGGTGAAGTTGAGGGTGGTAATACCTTTGCTGGAGCACTCAAAAAATATCCTCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCGGGTGAACAATCAGGTGCGCTTGAGACCATGCTGGATCGTGTGGCAGTCTATAAA
GAAAAAAGTGAGTTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTCCCTGTTTTCCAAGAACTCTTTAGTTCCTTTGGTGCAGACTTGCCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGTTGATTACC
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGCTAGATAAAGCCGCCCTCAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGCACCCTATCGACAACCTTTGCTGCAGGTGTACCCTTAATTG
ATGCCCTCGAATCTACCGCGGGTGCAACCAACAATGTGGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAGCTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCCGTACAGATGGTGGCGATTGGTGA
AGAATCTGGTGCCCTCGATGCCATGCTGGATAAAGTTGCAACTCACTATGAAAACGAAGTCGATAATGCGGTAGATGGCT
TAACCTCAATGATGGAGCCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.157

100

0.422
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment