Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F9230_RS15630 Genome accession   NZ_CP045099
Coordinates   3265306..3266532 (+) Length   408 a.a.
NCBI ID   WP_159152946.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3260306..3271532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS15585 (F9230_15635) rimP 3260669..3261193 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  F9230_RS15615 (F9230_15665) secG 3262149..3262478 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  F9230_RS15620 (F9230_15670) tpiA 3262492..3263283 (-) 792 WP_168159358.1 triose-phosphate isomerase -
  F9230_RS15625 (F9230_15675) pilB 3263563..3265275 (+) 1713 WP_168159359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F9230_RS15630 (F9230_15680) pilC 3265306..3266532 (+) 1227 WP_159152946.1 type II secretion system F family protein Machinery gene
  F9230_RS15635 (F9230_15685) pilD 3266532..3267392 (+) 861 WP_218288793.1 prepilin peptidase Machinery gene
  F9230_RS15640 (F9230_15690) coaE 3267399..3267998 (+) 600 WP_224216451.1 dephospho-CoA kinase -
  F9230_RS15645 (F9230_15695) - 3268013..3268930 (-) 918 WP_029574926.1 DMT family transporter -
  F9230_RS15650 (F9230_15700) rlmB 3268963..3269712 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  F9230_RS15655 (F9230_15705) - 3269855..3270178 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44846.25 Da        Isoelectric Point: 9.8063

>NTDB_id=391878 F9230_RS15630 WP_159152946.1 3265306..3266532(+) (pilC) [Acinetobacter johnsonii strain AJ14]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=391878 F9230_RS15630 WP_159152946.1 3265306..3266532(+) (pilC) [Acinetobacter johnsonii strain AJ14]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATAATGAAGAAAAAAGTGACGACACTGGACATCACGATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCACTAGTACAAGGTTTCGAAATTGTGGCTGAAGGTTTGGAAAACCCGTCTATGCGTGAAGT
CGTACTGGGCATTAAAGGCGAAGTGGAAGGTGGTAATACCTTTGCTGGAGCACTCAGAAAATATCCACAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCGGGTGCACTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTACTAAAACAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTAGTTGTGGTTGCGGTGATCGT
AACTATTATTTTGATGGTCAAAGTTGTCCCTGTTTTCCAAGATTTATTCAGTTCCTTTGGTGCGGATTTACCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGGTAATTACC
GCATTACTCGAAACCAAAAAACGCAGTAAAAAGTTTCGTGACATGCTGGATAAAGCCGCACTGAAAGCCCCGATTTTTGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGCACCCTGTCTACCACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCTCTCGAATCTACCGCGGGTGCAACCAACAATGTGGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCAACCCACTATGAAAATGAAGTCGATAATGCGGTGGATGGTT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.216

100

0.892
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

61.975

99.265

0.615
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.157

100

0.422
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment